Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV49_RS02620 Genome accession   NZ_AP025499
Coordinates   520307..520912 (-) Length   201 a.a.
NCBI ID   WP_017108721.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 515307..525912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS02610 aceF 516511..518397 (+) 1887 WP_192852299.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OCV49_RS02615 lpdA 518640..520067 (+) 1428 WP_017106891.1 dihydrolipoyl dehydrogenase -
  OCV49_RS02620 opaR 520307..520912 (-) 606 WP_017108721.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV49_RS02625 hpt 521248..521778 (+) 531 WP_010435974.1 hypoxanthine phosphoribosyltransferase -
  OCV49_RS02630 can 521874..522533 (-) 660 WP_017108722.1 carbonate dehydratase -
  OCV49_RS02635 - 522820..524451 (+) 1632 WP_170960678.1 SulP family inorganic anion transporter -
  OCV49_RS02640 - 524772..525689 (+) 918 WP_192852298.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23240.45 Da        Isoelectric Point: 6.0739

>NTDB_id=92187 OCV49_RS02620 WP_017108721.1 520307..520912(-) (opaR) [Vibrio lentus strain LMG 21034]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=92187 OCV49_RS02620 WP_017108721.1 520307..520912(-) (opaR) [Vibrio lentus strain LMG 21034]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTGCAATTGATGGAGATCGCTCTTGA
AGTTTTCTCTCGTCGTGGCATTGGCCGTGGCGGTCATGCAGACATCGCAGACATTGCTCAAGTATCAGTTGCAACTGTAT
TTAACTACTTCCCAACCCGAGAAGACCTGGTTGATGAAGTACTTAATCACGTAGTTCGCCAATTCTCTAACTTCCTTTCA
GACAATATCGACTTAGATATTCACGCAAAAGAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTAAACGTATGGTTTGAGTGGAGTGCTTCGACTCGTGATGAAGTGTGGCCTCTGTTTGTAACCACTAACC
GCACTAACCAGATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGACCCTAAA
CATCTTGCGAACCTATTCCACGGCATTTGTTACTCGCTATTCATCCAAGCGAAACGTGTAGATACACAAGAAGAACTTTC
GACCTTGACGGATAGCTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83

99.502

0.826
  hapR Vibrio cholerae C6706

73.869

99.005

0.731
  hapR Vibrio cholerae strain A1552

73.869

99.005

0.731

Multiple sequence alignment