Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCV49_RS02370 Genome accession   NZ_AP025499
Coordinates   472336..473316 (+) Length   326 a.a.
NCBI ID   WP_029223238.1    Uniprot ID   A0A1R3EA79
Organism   Vibrio lentus strain LMG 21034     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 467336..478316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS02340 ispD 467589..468290 (+) 702 WP_017090808.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OCV49_RS02345 ispF 468293..468772 (+) 480 WP_102340797.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCV49_RS02350 truD 468795..469841 (+) 1047 WP_192852310.1 tRNA pseudouridine(13) synthase TruD -
  OCV49_RS02355 surE 469918..470661 (+) 744 WP_192852309.1 5'/3'-nucleotidase SurE -
  OCV49_RS02360 - 470662..471288 (+) 627 WP_065110786.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCV49_RS02365 nlpD 471324..472238 (+) 915 WP_192852308.1 murein hydrolase activator NlpD -
  OCV49_RS02370 rpoS 472336..473316 (+) 981 WP_029223238.1 RNA polymerase sigma factor RpoS Regulator
  OCV49_RS02375 mutS 473463..476024 (-) 2562 WP_102383514.1 DNA mismatch repair protein MutS -
  OCV49_RS02380 pncC 476148..476642 (+) 495 WP_029223239.1 nicotinamide-nucleotide amidase -
  OCV49_RS02385 recA 476782..477822 (+) 1041 WP_029223240.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37246.48 Da        Isoelectric Point: 5.4366

>NTDB_id=92179 OCV49_RS02370 WP_029223238.1 472336..473316(+) (rpoS) [Vibrio lentus strain LMG 21034]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKAETKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=92179 OCV49_RS02370 WP_029223238.1 472336..473316(+) (rpoS) [Vibrio lentus strain LMG 21034]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAGCCGAAACGAAAGAAGAGACTGAAGTTACATCTAAGAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATCGGTTTCTCACCACTATTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTGCGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGTCT
TGCACTTCTCGATCTTATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGATCCAGAGCGCGGCTTCC
GTTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGCTAATGAATCAGACTCGTACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAATATCTACCTGCGTACGGCACGAGAGTTATCACAAAAACTTGACCACGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCAGTCGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CCGTTGATACGCCTATCGGTGGTGATGGTGAGAAAGCGCTACTGGATATTATTCCGGACATCAATAACTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATTAAAAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGATTACTTGGCTATGAACCATCAACACTAGAAGAAGTAGGCCGTGAAATTAGCCTAACTCGTGAAC
GTGTTCGCCAAATCCAAGTTGAAGGTCTTCGTCGTTTACGTGAGATTCTAATCAAGCAAGGCTTGAATATGGAAAACCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EA79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.437

100

0.834

Multiple sequence alignment