Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VPZ82_RS21880 Genome accession   NZ_CP142110
Coordinates   4703014..4703649 (-) Length   211 a.a.
NCBI ID   WP_031322710.1    Uniprot ID   A0A1X1A0J8
Organism   Pseudomonas putida strain WBC-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4698014..4708649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPZ82_RS21850 (VPZ82_21850) murB 4699111..4700130 (-) 1020 WP_021784974.1 UDP-N-acetylmuramate dehydrogenase -
  VPZ82_RS21855 (VPZ82_21855) - 4700127..4700591 (-) 465 WP_019752229.1 low molecular weight protein-tyrosine-phosphatase -
  VPZ82_RS21860 (VPZ82_21860) kdsB 4700591..4701355 (-) 765 WP_325948617.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VPZ82_RS21865 (VPZ82_21865) - 4701352..4701537 (-) 186 WP_003247142.1 Trm112 family protein -
  VPZ82_RS21870 (VPZ82_21870) lpxK 4701582..4702583 (-) 1002 WP_021784972.1 tetraacyldisaccharide 4'-kinase -
  VPZ82_RS21875 (VPZ82_21875) - 4702583..4703017 (-) 435 WP_021784971.1 ExbD/TolR family protein -
  VPZ82_RS21880 (VPZ82_21880) exbB 4703014..4703649 (-) 636 WP_031322710.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VPZ82_RS21885 (VPZ82_21885) comA 4704828..4707041 (-) 2214 WP_325948618.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VPZ82_RS21890 (VPZ82_21890) - 4707184..4707690 (+) 507 Protein_4316 DUF2062 domain-containing protein -
  VPZ82_RS21895 (VPZ82_21895) - 4707700..4708479 (-) 780 WP_003247128.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22857.14 Da        Isoelectric Point: 7.3616

>NTDB_id=921767 VPZ82_RS21880 WP_031322710.1 4703014..4703649(-) (exbB) [Pseudomonas putida strain WBC-3]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=921767 VPZ82_RS21880 WP_031322710.1 4703014..4703649(-) (exbB) [Pseudomonas putida strain WBC-3]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGGCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATTTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGGGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGTACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGTATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACGCCGCCGTACTGGCCAGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGTCGTATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGGGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1A0J8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.905

99.526

0.815