Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VPZ82_RS21885 Genome accession   NZ_CP142110
Coordinates   4704828..4707041 (-) Length   737 a.a.
NCBI ID   WP_325948618.1    Uniprot ID   -
Organism   Pseudomonas putida strain WBC-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4699828..4712041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPZ82_RS21855 (VPZ82_21855) - 4700127..4700591 (-) 465 WP_019752229.1 low molecular weight protein-tyrosine-phosphatase -
  VPZ82_RS21860 (VPZ82_21860) kdsB 4700591..4701355 (-) 765 WP_325948617.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VPZ82_RS21865 (VPZ82_21865) - 4701352..4701537 (-) 186 WP_003247142.1 Trm112 family protein -
  VPZ82_RS21870 (VPZ82_21870) lpxK 4701582..4702583 (-) 1002 WP_021784972.1 tetraacyldisaccharide 4'-kinase -
  VPZ82_RS21875 (VPZ82_21875) - 4702583..4703017 (-) 435 WP_021784971.1 ExbD/TolR family protein -
  VPZ82_RS21880 (VPZ82_21880) exbB 4703014..4703649 (-) 636 WP_031322710.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VPZ82_RS21885 (VPZ82_21885) comA 4704828..4707041 (-) 2214 WP_325948618.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VPZ82_RS21890 (VPZ82_21890) - 4707184..4707690 (+) 507 Protein_4316 DUF2062 domain-containing protein -
  VPZ82_RS21895 (VPZ82_21895) - 4707700..4708479 (-) 780 WP_003247128.1 ABC transporter permease -
  VPZ82_RS21900 (VPZ82_21900) - 4708476..4709408 (-) 933 WP_019752231.1 ABC transporter ATP-binding protein -
  VPZ82_RS21905 (VPZ82_21905) - 4709542..4710165 (-) 624 WP_021784803.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79597.37 Da        Isoelectric Point: 9.7607

>NTDB_id=921768 VPZ82_RS21885 WP_325948618.1 4704828..4707041(-) (comA) [Pseudomonas putida strain WBC-3]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLLALVAVLVFEPL
AALLPGFWLSFAAVATLICCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTVLLPLGGVGDALLWMAGGLLEWLFRLLALVAQQHPAWVPPVLPGWAWLLVVLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLQTRHHTLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMVISHAHADHAGGAA
AIQRGLPVRRAIGGEALDDVQLQPCVSGEQWDWDGVRFSLWRWADGQSSNDRSCVLLIEAQGERLLLAGDMEAAAERAWL
AETEAPRIDWLQAPHHGSRSSSTEAFIRATAARGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGRQG
EVEFVRGQRRFWRAQLD

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=921768 VPZ82_RS21885 WP_325948618.1 4704828..4707041(-) (comA) [Pseudomonas putida strain WBC-3]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCGGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTCTGGCCGTTGGGTTGGTTTCTGCTGGGCCTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGCACTGCACAAGGCGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGTTTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTGAACCCGCACGGGCCTGACCGGGAAGCGCAGTTGCTGGCGCGACGGGTGGGGGCTACGGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAACGCTTGCTGATGGTCGA
AGCCAATGGCCGGCAGGCCGCGCTGGTGGCACTGGTGCTTGGCGATGGTGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGTGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGCTGGCTGGCGGGTGGTGGGGTGCCAGTGCAGCGGGCCTGTCTGATGCTGGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCTTTTTTTCCGTTGCTGCTTGCACTGGTCGCTGTGCTGGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTGCTGCTTCAGTGCCCGGTTGGGGGG
TTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAATGGGTGATCGCCATTGGTTTGCTGCCGGTGTTGCTGGCCACGGGGT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAATCTTGTCGCGGTGCCATGGGTCAGCCTGGCGGTGTTGCCGTTGGCGTTG
CTGGGTACAGTGCTGCTGCCGCTGGGTGGGGTAGGGGACGCGCTGCTGTGGATGGCGGGTGGCCTGCTGGAATGGCTGTT
CCGGTTGCTGGCGTTGGTGGCGCAGCAGCATCCGGCGTGGGTGCCCCCGGTGCTGCCAGGGTGGGCCTGGCTACTGGTGG
TGCTGGGTGCGCTGCTGGTGCTGCTGCCCCGTGGCGTGCCTTTGCGTGGGTTGGGTGGGGTCATGTTGCTGGCACTGTGG
GTGCCCAGGGAGCCAGTGCCGTTCGGCCAGGTCGAGGTCTGGCAATTGGATGTCGGTCAGGGGCTGGCGGTGCTGCTGCA
GACTAGGCATCACACCCTGCTCTACGATGCCGGTCCGGCCCGGGGAGAGAGCGACCTGGGGGAGCGGGTGGTGCTGCCGA
CTCTGCGCAAGCTGGGGGTGGGTAGCCTCGACCTGATGGTGATCAGTCATGCACATGCTGACCATGCTGGCGGTGCTGCG
GCAATACAACGTGGTCTGCCGGTCAGGCGGGCAATTGGTGGGGAAGCGCTGGATGACGTGCAATTGCAGCCTTGCGTCAG
TGGCGAGCAATGGGACTGGGATGGCGTGCGTTTTTCGCTGTGGCGCTGGGCGGACGGGCAGAGCAGCAATGACCGTTCTT
GTGTGTTGTTGATAGAGGCGCAGGGCGAGCGTCTGCTGCTGGCGGGGGATATGGAAGCTGCGGCCGAACGGGCCTGGTTG
GCAGAGACTGAAGCGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCAT
TCGGGCAACCGCAGCGCGGGGGGTATTGATTTCGCGAGGGCGCAACAACAGCTTCGGGCACCCGCATGTGCAGGTGATGG
AGCGTTATCAGCGGCATGGGTTGGCGGTGCATGACACGGCGGTGGAGGGCGCGTTGCGGTTGGTGTTGGGGCGGCAGGGA
GAAGTTGAGTTCGTTCGGGGGCAGCGGCGGTTTTGGCGGGCTCAACTGGATTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(12-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-671)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.645

98.1

0.575
  comA Ralstonia pseudosolanacearum GMI1000

35.204

100

0.374