Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AB3430_RS04610 Genome accession   NZ_CP162430
Coordinates   886696..887808 (+) Length   370 a.a.
NCBI ID   WP_341262118.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22702     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 881696..892808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3430_RS04585 (AB3430_04585) rnpA 881959..882312 (-) 354 WP_001789343.1 ribonuclease P protein component -
  AB3430_RS04590 (AB3430_04590) rpmH 882433..882570 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  AB3430_RS04595 (AB3430_04595) dnaA 883301..884662 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  AB3430_RS04600 (AB3430_04600) dnaN 884940..886073 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  AB3430_RS04605 (AB3430_04605) yaaA 886454..886699 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  AB3430_RS04610 (AB3430_04610) recF 886696..887808 (+) 1113 WP_341262118.1 DNA replication/repair protein RecF Machinery gene
  AB3430_RS04615 (AB3430_04615) gyrB 887818..889753 (+) 1936 Protein_903 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AB3430_RS04620 (AB3430_04620) gyrA 889790..892459 (+) 2670 WP_000819067.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42401.40 Da        Isoelectric Point: 6.4362

>NTDB_id=921687 AB3430_RS04610 WP_341262118.1 886696..887808(+) (recF) [Staphylococcus aureus strain TUM22702]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENGQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=921687 AB3430_RS04610 WP_341262118.1 886696..887808(+) (recF) [Staphylococcus aureus strain TUM22702]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGGACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTAAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.062

100

0.495