Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VQ575_RS07910 Genome accession   NZ_CP142104
Coordinates   1776049..1776684 (+) Length   211 a.a.
NCBI ID   WP_162488979.1    Uniprot ID   -
Organism   Pseudomonas frederiksbergensis strain YE17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1771049..1781684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ575_RS07890 (VQ575_07890) - 1771257..1772189 (+) 933 WP_039594044.1 ABC transporter ATP-binding protein -
  VQ575_RS07895 (VQ575_07895) - 1772186..1772965 (+) 780 WP_039594045.1 ABC transporter permease -
  VQ575_RS07900 (VQ575_07900) - 1773045..1773560 (-) 516 WP_039594046.1 DUF2062 domain-containing protein -
  VQ575_RS07905 (VQ575_07905) comA 1773706..1775952 (+) 2247 WP_325919411.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VQ575_RS07910 (VQ575_07910) exbB 1776049..1776684 (+) 636 WP_162488979.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VQ575_RS07915 (VQ575_07915) - 1776681..1777109 (+) 429 WP_039594048.1 ExbD/TolR family protein -
  VQ575_RS07920 (VQ575_07920) lpxK 1777109..1778119 (+) 1011 WP_325919413.1 tetraacyldisaccharide 4'-kinase -
  VQ575_RS07925 (VQ575_07925) - 1778144..1778329 (+) 186 WP_003179363.1 Trm112 family protein -
  VQ575_RS07930 (VQ575_07930) kdsB 1778326..1779090 (+) 765 WP_325919415.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VQ575_RS07935 (VQ575_07935) - 1779090..1779554 (+) 465 WP_039594051.1 low molecular weight protein-tyrosine-phosphatase -
  VQ575_RS07940 (VQ575_07940) murB 1779551..1780570 (+) 1020 WP_325919416.1 UDP-N-acetylmuramate dehydrogenase -
  VQ575_RS07945 (VQ575_07945) - 1780707..1781207 (-) 501 WP_152668473.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22856.97 Da        Isoelectric Point: 8.0840

>NTDB_id=921621 VQ575_RS07910 WP_162488979.1 1776049..1776684(+) (exbB) [Pseudomonas frederiksbergensis strain YE17]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSAFTGTGMSTNASVLASGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=921621 VQ575_RS07910 WP_162488979.1 1776049..1776684(+) (exbB) [Pseudomonas frederiksbergensis strain YE17]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCTTGCGGGCCAGTCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCGCTGGGTGAAATCCTTGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGTATCGAAGAGGCGGCGGCCCGGGTCATCCATGAACTTGAGCGCTATCT
CAATGCCCTGGGCACCATCGCTGCCATGGCCCCGTTGCTGGGTTTGTTGGGCACGGTACTGGGCATGATCGATATTTTCA
GCGCGTTTACCGGTACTGGCATGAGCACCAACGCATCGGTGCTGGCCAGCGGTATTTCCAAAGCGTTGATCACCACCGCA
GCCGGTTTGATGGTGGGTATCCCCTCGGTGTTTTTCCATCGCTTCCTGCAGCGCCGCGTCGACGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGTGATCGTGACGTGGACCTGGCCGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.714

99.526

0.853