Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VQ575_RS07905 Genome accession   NZ_CP142104
Coordinates   1773706..1775952 (+) Length   748 a.a.
NCBI ID   WP_325919411.1    Uniprot ID   -
Organism   Pseudomonas frederiksbergensis strain YE17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1768706..1780952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ575_RS07885 (VQ575_07885) - 1770500..1771123 (+) 624 WP_039594043.1 glutathione S-transferase family protein -
  VQ575_RS07890 (VQ575_07890) - 1771257..1772189 (+) 933 WP_039594044.1 ABC transporter ATP-binding protein -
  VQ575_RS07895 (VQ575_07895) - 1772186..1772965 (+) 780 WP_039594045.1 ABC transporter permease -
  VQ575_RS07900 (VQ575_07900) - 1773045..1773560 (-) 516 WP_039594046.1 DUF2062 domain-containing protein -
  VQ575_RS07905 (VQ575_07905) comA 1773706..1775952 (+) 2247 WP_325919411.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VQ575_RS07910 (VQ575_07910) exbB 1776049..1776684 (+) 636 WP_162488979.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VQ575_RS07915 (VQ575_07915) - 1776681..1777109 (+) 429 WP_039594048.1 ExbD/TolR family protein -
  VQ575_RS07920 (VQ575_07920) lpxK 1777109..1778119 (+) 1011 WP_325919413.1 tetraacyldisaccharide 4'-kinase -
  VQ575_RS07925 (VQ575_07925) - 1778144..1778329 (+) 186 WP_003179363.1 Trm112 family protein -
  VQ575_RS07930 (VQ575_07930) kdsB 1778326..1779090 (+) 765 WP_325919415.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VQ575_RS07935 (VQ575_07935) - 1779090..1779554 (+) 465 WP_039594051.1 low molecular weight protein-tyrosine-phosphatase -
  VQ575_RS07940 (VQ575_07940) murB 1779551..1780570 (+) 1020 WP_325919416.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 80792.66 Da        Isoelectric Point: 8.9931

>NTDB_id=921620 VQ575_RS07905 WP_325919411.1 1773706..1775952(+) (comA) [Pseudomonas frederiksbergensis strain YE17]
MRTAMVALALGLLAPTFLPVLPPFWLMAAMSLAALLALPTRAYLAGVFFIGLAWACFSAQIALDDRLSVALEGQTRWVEG
RVVGLPQHSDGVVRFELADAYSRRTRLPTSMRLAWYGGPLVNSGETWRLAVKLKRPAGLLNPHGFDYEAWLLSRGIGATG
TVKDGSLLQPAQGAWRDGVRQALANVEAQGRSGALLALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARHGVWPARLPWLPWACALAFAAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFRQAQPWWAWLAAFVGVLVLDPL
ASLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLIALGLCPLLLILGLPVSLSGPLINLLAVPWISLLVLPSAL
LGTALLPIPFVGESLLWIAGGLLDLLFKGLALAAGQVPAWVPPAVPLWAWCIAASGALLLLLPKGVPLRLLGWPMLLLIV
FPPGEEVPMGQAEIWQLDVGQGLAILVRTHRHTLLYDAGPRFGEADAGERVVVPTLHKLGVQEIDLMLLSHADADHAGGA
QAVRNGLPTTRVISGDPQALPGDLQAGPCNSGDSWTWDGVRFELWRWASAIESNQKSCVLLVVAGDERLLLTGDIDTHAE
RALLEGPLAGPIQWLAAPHHGSRSSSSMALLARLKPHSVLISSGRSNAFGHPHPWVMERYRRLGLSILDSAEQGAIRLQL
GAFVPAHTEAGVRRYWRDRLAAGAWTEH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=921620 VQ575_RS07905 WP_325919411.1 1773706..1775952(+) (comA) [Pseudomonas frederiksbergensis strain YE17]
ATGCGCACGGCAATGGTCGCGCTTGCACTGGGGCTGCTGGCTCCGACTTTCCTACCGGTATTGCCACCGTTCTGGTTGAT
GGCAGCCATGTCTTTAGCGGCATTGCTGGCGTTGCCGACGCGTGCGTACCTGGCAGGCGTTTTTTTCATTGGGCTGGCCT
GGGCCTGTTTTTCGGCACAGATTGCATTGGACGATCGGCTGTCCGTCGCGCTGGAGGGGCAAACCCGCTGGGTCGAGGGC
CGTGTCGTCGGGTTGCCGCAACACAGCGATGGCGTGGTGCGTTTCGAACTCGCGGATGCGTATTCCCGGCGCACGCGCTT
GCCGACATCGATGCGTCTGGCCTGGTATGGCGGGCCGCTGGTCAACAGTGGCGAAACATGGCGCCTGGCGGTGAAGCTCA
AGCGCCCCGCGGGGCTGCTCAATCCCCATGGCTTCGACTATGAGGCCTGGCTGTTGAGCAGGGGCATCGGCGCCACCGGC
ACCGTCAAGGATGGATCGCTGCTGCAGCCGGCCCAGGGTGCCTGGCGTGATGGGGTCCGCCAGGCGTTGGCGAACGTCGA
AGCCCAGGGTCGTTCCGGTGCGCTGTTGGCGCTGGTCCTCGGCGACGGCGCCGGGCTGAGCCGCGAAGATTGGCAGGTGC
TGCAGGACACCGGCACTGTCCATTTATTGGTGATTTCCGGGCAACACATCGGCCTGCTTGCCGGCCTGGTCTATTTGTTG
GTGGCCGGCGCGGCGCGTCATGGCGTTTGGCCGGCGCGTTTGCCGTGGTTGCCCTGGGCATGTGCGCTGGCCTTTGCCGC
GGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGAAGGGCCTGCGCAATGATCGGCCTGGTGCTGCTAT
GGCGCTTGCGCTTTCGCCAGGCGCAACCGTGGTGGGCCTGGCTGGCGGCGTTCGTGGGCGTGTTGGTGCTGGATCCGCTG
GCGAGCCTGCGGCCAGGGTTCTGGTTGTCGTTCGCCGCAGTGGCGATATTGATGTTCACGTTCGGCGGTCGCCTGGGTCC
CTGGCGTTGGTGGCAGACCTGGACTCGTGCCCAGTGGTTGATCGCCCTGGGGCTGTGCCCGCTGTTGCTGATCCTGGGAC
TGCCGGTCAGTCTCAGCGGTCCGTTGATCAACTTGCTGGCGGTGCCTTGGATCAGCCTGCTGGTGCTGCCCTCGGCACTG
CTTGGCACGGCGTTGCTGCCGATACCCTTCGTCGGTGAAAGCCTGCTCTGGATCGCCGGCGGGCTGCTTGATCTGCTGTT
CAAGGGGCTCGCCCTGGCTGCGGGGCAGGTGCCGGCCTGGGTGCCTCCCGCCGTACCGCTTTGGGCGTGGTGCATTGCGG
CGTCCGGTGCGCTGCTGTTGTTGCTGCCCAAGGGCGTGCCGCTACGCCTCCTCGGGTGGCCGATGTTGTTGCTGATCGTT
TTTCCTCCAGGGGAAGAAGTGCCCATGGGCCAAGCCGAAATCTGGCAATTGGACGTCGGCCAGGGGCTGGCGATACTGGT
GCGCACCCATCGGCATACCTTGCTTTACGACGCAGGCCCGCGCTTTGGCGAGGCGGATGCCGGCGAGCGCGTGGTCGTGC
CGACCTTGCATAAGCTTGGCGTGCAAGAGATCGACCTGATGTTACTGAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
CAGGCCGTGCGCAACGGATTACCAACGACCCGGGTCATCAGCGGTGATCCGCAAGCGCTGCCCGGCGATTTACAGGCGGG
TCCGTGCAATAGCGGCGACAGTTGGACATGGGACGGGGTCAGGTTCGAGCTCTGGCGCTGGGCTTCGGCCATCGAAAGCA
ACCAGAAATCCTGTGTCTTGCTGGTCGTGGCTGGCGATGAGCGACTGTTGTTGACCGGCGACATCGATACCCACGCCGAG
CGCGCTTTGCTCGAAGGCCCCCTGGCGGGGCCGATCCAATGGCTGGCGGCACCGCACCACGGCAGCCGCAGCTCATCGTC
GATGGCGCTGCTGGCGCGGCTCAAGCCTCATTCCGTGTTGATCTCCAGCGGACGAAGCAATGCTTTCGGTCATCCGCATC
CGTGGGTGATGGAGCGGTACCGCAGGTTGGGCCTGTCGATCCTCGACAGTGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGTGCCTTCGTGCCAGCGCATACCGAGGCCGGCGTTCGGCGCTACTGGCGTGACCGGCTGGCCGCAGGGGCTTGGACAGA
ACATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.306

96.257

0.571
  comA Ralstonia pseudosolanacearum GMI1000

33.176

100

0.376