Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   VP461_RS17585 Genome accession   NZ_CP142100
Coordinates   3734266..3734739 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain A20AB13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3729266..3739739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP461_RS17560 (VP461_17560) - 3729730..3731835 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  VP461_RS17565 (VP461_17565) - 3731875..3732004 (-) 130 Protein_3424 hypothetical protein -
  VP461_RS17570 (VP461_17570) rpoZ 3732043..3732321 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  VP461_RS17575 (VP461_17575) gmk 3732394..3733023 (-) 630 WP_000015937.1 guanylate kinase -
  VP461_RS17580 (VP461_17580) ispH 3733146..3734096 (+) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  VP461_RS17585 (VP461_17585) fimU 3734266..3734739 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  VP461_RS17590 (VP461_17590) pilV 3734733..3735293 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  VP461_RS17595 (VP461_17595) pilW 3735294..3736295 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  VP461_RS17600 (VP461_17600) pilX 3736292..3737110 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=921561 VP461_RS17585 WP_001214061.1 3734266..3734739(+) (fimU) [Acinetobacter baumannii strain A20AB13]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=921561 VP461_RS17585 WP_001214061.1 3734266..3734739(+) (fimU) [Acinetobacter baumannii strain A20AB13]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987