Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV24_RS02760 Genome accession   NZ_AP025497
Coordinates   552937..553542 (-) Length   201 a.a.
NCBI ID   WP_032547912.1    Uniprot ID   A0A120DGB0
Organism   Vibrio kanaloae strain LMG 20539     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 547937..558542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS02750 aceF 549185..551062 (+) 1878 WP_102507348.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OCV24_RS02755 lpdA 551305..552735 (+) 1431 WP_017056618.1 dihydrolipoyl dehydrogenase -
  OCV24_RS02760 opaR 552937..553542 (-) 606 WP_032547912.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV24_RS02765 hpt 553876..554406 (+) 531 WP_017056620.1 hypoxanthine phosphoribosyltransferase -
  OCV24_RS02770 can 554511..555170 (-) 660 WP_017056621.1 carbonate dehydratase -
  OCV24_RS02775 - 555457..557088 (+) 1632 WP_017056622.1 SulP family inorganic anion transporter -
  OCV24_RS02780 - 557394..558311 (+) 918 WP_017056623.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23333.58 Da        Isoelectric Point: 6.2928

>NTDB_id=92144 OCV24_RS02760 WP_032547912.1 552937..553542(-) (opaR) [Vibrio kanaloae strain LMG 20539]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKKNLHNIATEMVNLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLLQNMFSKAIERGDVCDEHDPK
HLANLFHGICYSLFIQAKRLETPEEQENLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=92144 OCV24_RS02760 WP_032547912.1 552937..553542(-) (opaR) [Vibrio kanaloae strain LMG 20539]
ATGGACTCAATATCTAAGAGGCCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTATTCTCTCGCCGCGGCATTGGCCGAGGTGGCCACGCAGATATCGCAGATATTGCTCAGGTGTCTGTAGCAACTGTAT
TTAACTATTTCCCTACCCGAGAAGATCTGGTCGATGAAGTACTGAATCATGTCGTACGCCAATTCTCTAACTTCCTTTCA
GATAATATCGATCTCGATATTCACGCGAAAAAAAATCTACATAATATTGCCACTGAAATGGTTAACTTAGTGGCTCAAGA
TAGCCATTGGCTGAATGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTATGGCCTTTATTTGTCACAACCAACC
GCACTAACCAAATGTTATTACAAAATATGTTTAGTAAGGCGATTGAGCGTGGAGATGTGTGTGATGAGCATGATCCTAAG
CATCTTGCGAACCTATTTCACGGCATCTGCTACTCGTTATTCATTCAAGCAAAACGTCTCGAAACGCCAGAAGAGCAAGA
AAACTTAACAGACAGCTACTTAAACATGTTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120DGB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81

99.502

0.806
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment