Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCV24_RS02530 Genome accession   NZ_AP025497
Coordinates   508194..509174 (+) Length   326 a.a.
NCBI ID   WP_102508255.1    Uniprot ID   A0A2N7J6T9
Organism   Vibrio kanaloae strain LMG 20539     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 503194..514174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS02500 ispD 503447..504148 (+) 702 WP_150878385.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OCV24_RS02505 ispF 504151..504630 (+) 480 WP_017056578.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCV24_RS02510 truD 504653..505699 (+) 1047 WP_150878383.1 tRNA pseudouridine(13) synthase TruD -
  OCV24_RS02515 surE 505775..506518 (+) 744 WP_136979137.1 5'/3'-nucleotidase SurE -
  OCV24_RS02520 - 506519..507145 (+) 627 WP_017056581.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCV24_RS02525 nlpD 507181..508095 (+) 915 WP_136997592.1 murein hydrolase activator NlpD -
  OCV24_RS02530 rpoS 508194..509174 (+) 981 WP_102508255.1 RNA polymerase sigma factor RpoS Regulator
  OCV24_RS02535 mutS 509289..511850 (-) 2562 WP_150878381.1 DNA mismatch repair protein MutS -
  OCV24_RS02540 pncC 511975..512469 (+) 495 WP_060468640.1 nicotinamide-nucleotide amidase -
  OCV24_RS02545 recA 512609..513649 (+) 1041 WP_017056586.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37260.55 Da        Isoelectric Point: 5.2708

>NTDB_id=92137 OCV24_RS02530 WP_102508255.1 508194..509174(+) (rpoS) [Vibrio kanaloae strain LMG 20539]
MSISNAVTKEEFDLVQVTTEPETLGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=92137 OCV24_RS02530 WP_102508255.1 508194..509174(+) (rpoS) [Vibrio kanaloae strain LMG 20539]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGTCCAAGTAACCACGGAACCGGAAACACTTGGAAAAGC
AAAGCGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCCTAGATGCCACTCAACTTT
ATCTAGGCGAGATCGGTTTCTCACCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCTGCACGTAAACGCATGATAGAAAGTAACCTGCGTTTAGTGGTAAAGATTTCACGTCGTTATAGCAATCGCGGTTT
AGCACTTCTCGATCTAATTGAAGAAGGCAACTTAGGTTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAACGTGGTTTCC
GTTTTTCGACTTACGCGACATGGTGGATTCGTCAAACTATTGAACGTGCGTTGATGAATCAGACTCGGACTATCCGTTTA
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAGATCGCTTCTAAGCTAGATAAACCCGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTAGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAATTCGTTGATATTCTGGCTTGATGAGCTGAATCCGAAGCAGAAAGAGGTGCT
TGCACGTCGATTTGGATTGCTTGGTTATGAACCGTCAACACTAGAAGAAGTTGGTCGTGAAATCAGCCTGACTCGTGAGC
GTGTTCGTCAAATTCAAGTTGAAGGTTTGCGCCGTTTACGTGAGATTCTGATCAAACAAGGTCTGAACATGGAAAACCTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7J6T9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.437

100

0.834

Multiple sequence alignment