Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VPH48_RS30140 Genome accession   NZ_CP142041
Coordinates   6607271..6607678 (-) Length   135 a.a.
NCBI ID   WP_010564379.1    Uniprot ID   A0A7Y8D5M8
Organism   Pseudomonas veronii strain T1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6602271..6612678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPH48_RS30125 (VPH48_30125) - 6604274..6606325 (-) 2052 WP_017844995.1 methyl-accepting chemotaxis protein -
  VPH48_RS30130 (VPH48_30130) - 6606322..6606846 (-) 525 WP_046381763.1 chemotaxis protein CheW -
  VPH48_RS30135 (VPH48_30135) pilH 6606859..6607224 (-) 366 WP_046487806.1 twitching motility response regulator PilH -
  VPH48_RS30140 (VPH48_30140) pilG 6607271..6607678 (-) 408 WP_010564379.1 twitching motility response regulator PilG Regulator
  VPH48_RS30145 (VPH48_30145) gshB 6607918..6608871 (+) 954 WP_017844998.1 glutathione synthase -
  VPH48_RS30150 (VPH48_30150) - 6608949..6609854 (+) 906 WP_017844999.1 energy transducer TonB -
  VPH48_RS30155 (VPH48_30155) - 6610052..6610621 (+) 570 WP_017845000.1 YqgE/AlgH family protein -
  VPH48_RS30160 (VPH48_30160) ruvX 6610621..6611058 (+) 438 WP_005792259.1 Holliday junction resolvase RuvX -
  VPH48_RS30165 (VPH48_30165) pyrR 6611143..6611649 (+) 507 WP_017845001.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  VPH48_RS30170 (VPH48_30170) - 6611674..6612678 (+) 1005 WP_017845002.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14906.40 Da        Isoelectric Point: 7.3842

>NTDB_id=921261 VPH48_RS30140 WP_010564379.1 6607271..6607678(-) (pilG) [Pseudomonas veronii strain T1]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=921261 VPH48_RS30140 WP_010564379.1 6607271..6607678(-) (pilG) [Pseudomonas veronii strain T1]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAAACGATCCGCCGCACCGCCGAAACCCTGTT
GAAGAACGTGGGCTGCGATGTCATCACGGCCATCGATGGTTTCGATGCCCTGGCCCGGATTGTGGATCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACGTGCGCCCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCTTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTCGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGCGCGATCAAGGCCTACGTGCCGGGTTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8D5M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.4

92.593

0.652
  vicR Streptococcus mutans UA159

38.889

93.333

0.363