Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VQY67_RS17180 Genome accession   NZ_CP142033
Coordinates   3740738..3741373 (+) Length   211 a.a.
NCBI ID   WP_146426791.1    Uniprot ID   -
Organism   Pseudomonas saxonica strain NCCB:25029     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3735738..3746373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQY67_RS17160 (VQY67_17160) - 3735946..3736878 (+) 933 WP_122783935.1 ABC transporter ATP-binding protein -
  VQY67_RS17165 (VQY67_17165) - 3736875..3737654 (+) 780 WP_146383910.1 ABC transporter permease -
  VQY67_RS17170 (VQY67_17170) - 3737696..3738211 (-) 516 WP_146383909.1 DUF2062 domain-containing protein -
  VQY67_RS17175 (VQY67_17175) comA 3738344..3740560 (+) 2217 WP_324830623.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VQY67_RS17180 (VQY67_17180) exbB 3740738..3741373 (+) 636 WP_146426791.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VQY67_RS17185 (VQY67_17185) - 3741370..3741798 (+) 429 WP_122783939.1 ExbD/TolR family protein -
  VQY67_RS17190 (VQY67_17190) lpxK 3741798..3742802 (+) 1005 WP_146426790.1 tetraacyldisaccharide 4'-kinase -
  VQY67_RS17195 (VQY67_17195) - 3742832..3743017 (+) 186 WP_122783941.1 Trm112 family protein -
  VQY67_RS17200 (VQY67_17200) kdsB 3743014..3743781 (+) 768 WP_122783942.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VQY67_RS17205 (VQY67_17205) murB 3743801..3744820 (+) 1020 WP_146426789.1 UDP-N-acetylmuramate dehydrogenase -
  VQY67_RS17210 (VQY67_17210) - 3744875..3745486 (+) 612 WP_208727488.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22868.04 Da        Isoelectric Point: 6.8762

>NTDB_id=921220 VQY67_RS17180 WP_146426791.1 3740738..3741373(+) (exbB) [Pseudomonas saxonica strain NCCB:25029]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPPHLLGQVWVWIKDKQLDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTANAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDMAGSNA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=921220 VQY67_RS17180 WP_146426791.1 3740738..3741373(+) (exbB) [Pseudomonas saxonica strain NCCB:25029]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGTGTCACGCCGCCTCATCTGTTGGGTCAGGTGTGGGTCTGGATCAAAGACA
AGCAGCTCGACAAGGAAAAACTCAAACAACTACGAGCCGACTCCCCGCTGGGTGAAATCCTGGCCGCCGGTCTGGCCAAC
TCCCGGCATGGCCGCGAAATCATGAAAGAGTGCATTGAAGAGGCCGCCGCAAGGGTCATTCATGAGCTGGAGCGCTACCT
CAACGCCTTGGGCACCATTGCTGCGATGGCCCCTCTGTTAGGATTGCTGGGCACTGTGCTGGGCATGATCGATATTTTCA
GCTCGTTTATGGGGTCTGGCATGACAGCTAACGCGGCCGTGCTCGCAGGGGGTATTTCCAAAGCGCTGATTACCACCGCC
GCCGGCTTGATGGTGGGTATCCCTGCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGGGTTGATGAGCTGGTGGTAGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGAAGTCGACATGGCCGGGAGCAACGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863