Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VQY67_RS17175 Genome accession   NZ_CP142033
Coordinates   3738344..3740560 (+) Length   738 a.a.
NCBI ID   WP_324830623.1    Uniprot ID   -
Organism   Pseudomonas saxonica strain NCCB:25029     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3733344..3745560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQY67_RS17155 (VQY67_17155) - 3735177..3735800 (+) 624 WP_146426792.1 glutathione S-transferase -
  VQY67_RS17160 (VQY67_17160) - 3735946..3736878 (+) 933 WP_122783935.1 ABC transporter ATP-binding protein -
  VQY67_RS17165 (VQY67_17165) - 3736875..3737654 (+) 780 WP_146383910.1 ABC transporter permease -
  VQY67_RS17170 (VQY67_17170) - 3737696..3738211 (-) 516 WP_146383909.1 DUF2062 domain-containing protein -
  VQY67_RS17175 (VQY67_17175) comA 3738344..3740560 (+) 2217 WP_324830623.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VQY67_RS17180 (VQY67_17180) exbB 3740738..3741373 (+) 636 WP_146426791.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VQY67_RS17185 (VQY67_17185) - 3741370..3741798 (+) 429 WP_122783939.1 ExbD/TolR family protein -
  VQY67_RS17190 (VQY67_17190) lpxK 3741798..3742802 (+) 1005 WP_146426790.1 tetraacyldisaccharide 4'-kinase -
  VQY67_RS17195 (VQY67_17195) - 3742832..3743017 (+) 186 WP_122783941.1 Trm112 family protein -
  VQY67_RS17200 (VQY67_17200) kdsB 3743014..3743781 (+) 768 WP_122783942.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VQY67_RS17205 (VQY67_17205) murB 3743801..3744820 (+) 1020 WP_146426789.1 UDP-N-acetylmuramate dehydrogenase -
  VQY67_RS17210 (VQY67_17210) - 3744875..3745486 (+) 612 WP_208727488.1 hypothetical protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80472.83 Da        Isoelectric Point: 10.6761

>NTDB_id=921219 VQY67_RS17175 WP_324830623.1 3738344..3740560(+) (comA) [Pseudomonas saxonica strain NCCB:25029]
MHTGMLALASGLIALRFLPVLPPVWCVYLLLAAGLVLLIGRRYPPGLFLLGVGWACIQGQSALDDRLPPAFDGRTLWVEG
RVVGLPQPTARGVRFELQGAHSRHVRLPETLLLSWWGGPSVNSGERWRLAVTLKRPKGLLNPQGFDYQAWLLAKGVGATG
SVKDGQLISPATHAWRDGLRQRLLGTDANGRAPWLAALVMGDGSGLSRDDWQLLQATGTVHLLVISGQHIGLFAGLLYGL
VALLARYGVWPRRLPWLPWACGLAFVGATGYGLLAGFEVPVQRACVMLGLVLLWRLRFRHLGVWMPYLLAFNAVLIVDPL
ASLKPGLWLSFGAVAVLIFTFGSRLGPWGWRAAWLRPQGLIALGLFPLLWILGLPISLSGPLANLVAVPWISLLVLPTAL
LGTFLLPVPWLGESLLWLSGGLLDVLIRGLNLLSGVITPWLPIEVPVYIWLLTVIGVLILLLPAGVVLRPLGWPLALLAV
FAPREQIPHGQAQVLQLDVGQGLAMVLRTRNHTLLYDAGPKVRDLDQGERVVVPVLRSLGVKALDVMLISHADSDHAGGA
LAVYRSMKVARVISGDVPGLPAPLQAQPCRTDERWEWDGVRFSLWQWQEAKDSNQKSCVLQVEARGERLLLTGDIDTHAE
RALLKSSLAVPTQWLQAPHHGSRTSSSMVFLKALAPGAVLISRGHGNTFGHPHPLVLARYQALGMQVLDSAQQGAITFRL
GAFGSAKSFQERRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=921219 VQY67_RS17175 WP_324830623.1 3738344..3740560(+) (comA) [Pseudomonas saxonica strain NCCB:25029]
ATGCACACAGGGATGTTGGCGCTGGCGTCGGGCTTGATTGCCTTGCGCTTTTTACCGGTACTGCCACCGGTGTGGTGTGT
TTATCTGTTGCTGGCCGCAGGGCTGGTGTTGCTGATTGGGCGCAGGTATCCGCCCGGTTTGTTTTTGCTTGGAGTGGGTT
GGGCCTGCATACAAGGGCAATCGGCCCTTGATGATCGATTGCCGCCTGCATTCGACGGGCGAACGCTTTGGGTCGAGGGG
CGTGTGGTCGGACTGCCACAACCCACGGCCAGGGGCGTGCGTTTCGAGCTGCAAGGCGCCCATTCGCGGCACGTCAGATT
GCCGGAGACCCTGCTACTGAGCTGGTGGGGCGGGCCGTCGGTCAACAGTGGCGAGCGGTGGCGATTGGCGGTCACGCTCA
AGCGCCCTAAAGGGTTGCTCAATCCGCAGGGGTTCGACTATCAGGCGTGGTTACTGGCCAAGGGCGTTGGCGCGACCGGG
TCGGTCAAAGATGGCCAGCTCATCTCCCCAGCCACCCATGCATGGCGTGATGGGTTGCGCCAGCGCCTGCTCGGCACGGA
TGCCAACGGTCGTGCGCCGTGGCTGGCTGCGCTGGTCATGGGCGATGGTTCGGGTCTGAGTCGCGATGATTGGCAACTGC
TGCAAGCGACCGGTACCGTCCATTTGTTGGTGATTTCCGGGCAACACATCGGCCTGTTTGCCGGTTTGCTCTATGGCCTT
GTCGCACTGCTGGCACGCTACGGGGTATGGCCCCGTCGACTGCCGTGGTTGCCTTGGGCGTGCGGGCTGGCGTTTGTCGG
GGCGACTGGCTACGGCCTGTTGGCGGGGTTTGAGGTGCCGGTGCAGCGTGCCTGCGTGATGCTCGGGCTGGTATTGCTGT
GGCGGTTACGCTTTCGTCATTTGGGCGTGTGGATGCCATATTTACTCGCGTTCAATGCCGTTTTGATAGTCGATCCGCTG
GCGAGCCTGAAGCCTGGTTTGTGGTTGTCCTTTGGTGCGGTGGCCGTGTTGATATTTACTTTTGGCTCACGCTTGGGCCC
GTGGGGCTGGCGAGCTGCATGGCTTCGGCCGCAAGGGCTCATCGCTCTGGGGTTATTCCCGCTGTTATGGATACTGGGCT
TGCCCATCAGTTTGAGCGGGCCATTGGCCAATCTGGTCGCCGTGCCCTGGATCAGTCTGCTGGTGCTGCCCACGGCGTTA
TTGGGTACGTTCCTGCTGCCGGTGCCGTGGCTGGGTGAGAGCCTGCTCTGGCTGTCGGGCGGATTGCTGGATGTGTTGAT
CCGCGGGTTGAACCTGTTATCCGGTGTAATCACACCCTGGTTGCCCATAGAAGTGCCTGTGTACATCTGGTTATTGACCG
TCATCGGCGTCTTGATTCTGCTATTGCCCGCCGGTGTCGTGCTTCGGCCGCTGGGTTGGCCGCTGGCGCTGCTGGCCGTT
TTTGCGCCGCGCGAGCAGATACCCCACGGCCAAGCCCAAGTGTTGCAACTGGATGTCGGGCAGGGATTGGCGATGGTCTT
GCGCACCCGTAATCACACACTTTTGTACGATGCGGGGCCGAAAGTCAGGGATTTGGATCAAGGCGAGCGGGTAGTGGTAC
CCGTGTTGCGTTCGTTGGGGGTTAAGGCGCTGGATGTGATGTTGATCAGTCACGCCGACTCGGATCACGCGGGAGGAGCC
CTCGCGGTATATCGCAGCATGAAGGTTGCGCGAGTCATCAGCGGTGATGTGCCGGGGTTGCCTGCGCCATTGCAGGCGCA
GCCTTGCCGCACCGATGAGCGCTGGGAGTGGGATGGTGTACGGTTTTCCCTATGGCAGTGGCAAGAGGCAAAGGACAGTA
ATCAGAAATCTTGCGTATTACAGGTAGAAGCCCGCGGTGAACGGCTGTTGCTCACGGGTGACATTGACACTCATGCTGAA
CGAGCCTTGCTGAAATCTTCGCTGGCGGTTCCTACGCAGTGGCTACAAGCTCCGCACCACGGCAGCCGAACCTCCTCTTC
AATGGTGTTTCTCAAAGCACTGGCGCCCGGTGCGGTATTGATTTCCCGAGGCCATGGCAATACGTTTGGCCATCCGCATC
CTCTCGTGTTGGCGCGTTATCAGGCGCTGGGGATGCAAGTGCTCGACAGTGCCCAGCAAGGAGCTATCACCTTTAGATTG
GGCGCCTTTGGTTCGGCAAAGAGTTTTCAAGAGCGGCGCCGGTTTTGGCGTGATTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.255

95.799

0.577
  comA Ralstonia pseudosolanacearum GMI1000

33.855

100

0.381