Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DGAOKPDK_RS17990 Genome accession   NZ_CP142019
Coordinates   3815740..3816375 (-) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii strain EMB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3810740..3821375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS17955 (VOI31_RS17965) mlaE 3811076..3811852 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  DGAOKPDK_RS17960 (VOI31_RS17970) - 3811852..3812532 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  DGAOKPDK_RS17965 (VOI31_RS17975) - 3812559..3813200 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  DGAOKPDK_RS17970 (VOI31_RS17980) - 3813212..3813499 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  DGAOKPDK_RS17975 (VOI31_RS17985) - 3813569..3814582 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  DGAOKPDK_RS17980 (VOI31_RS17990) - 3814740..3815321 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  DGAOKPDK_RS17985 (VOI31_RS17995) - 3815336..3815737 (+) 402 WP_000849702.1 NUDIX hydrolase -
  DGAOKPDK_RS17990 (VOI31_RS18000) comF 3815740..3816375 (-) 636 WP_000472273.1 ComF family protein Machinery gene
  DGAOKPDK_RS17995 (VOI31_RS18005) recG 3816368..3818413 (-) 2046 WP_057054117.1 ATP-dependent DNA helicase RecG -
  DGAOKPDK_RS18000 (VOI31_RS18010) - 3818434..3819249 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  DGAOKPDK_RS18005 (VOI31_RS18015) adeT2 3819329..3820315 (+) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=921090 DGAOKPDK_RS17990 WP_000472273.1 3815740..3816375(-) (comF) [Acinetobacter baumannii strain EMB-1]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=921090 DGAOKPDK_RS17990 WP_000472273.1 3815740..3816375(-) (comF) [Acinetobacter baumannii strain EMB-1]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTACCCAATTAACCGGATCATTCAACAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCTAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTCAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991