Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   DGAOKPDK_RS07655 Genome accession   NZ_CP142019
Coordinates   1616416..1616796 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain EMB-1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1611416..1621796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS07625 (VOI31_RS07640) tadA 1611535..1612038 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  DGAOKPDK_RS07630 (VOI31_RS07645) - 1612045..1613169 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  DGAOKPDK_RS07635 (VOI31_RS07650) ung 1613166..1613879 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  DGAOKPDK_RS07640 (VOI31_RS07655) - 1613930..1614526 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  DGAOKPDK_RS07645 (VOI31_RS07660) gspK 1614756..1615715 (-) 960 WP_005128789.1 type II secretion system minor pseudopilin GspK -
  DGAOKPDK_RS07650 (VOI31_RS07665) xcpW 1615715..1616416 (-) 702 WP_004747380.1 type II secretion system minor pseudopilin GspJ Machinery gene
  DGAOKPDK_RS07655 (VOI31_RS07670) xcpV 1616416..1616796 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  DGAOKPDK_RS07660 (VOI31_RS07675) - 1616786..1617340 (-) 555 WP_005128793.1 type II secretion system protein -
  DGAOKPDK_RS07665 (VOI31_RS07680) - 1617350..1617958 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  DGAOKPDK_RS07670 (VOI31_RS07685) - 1617996..1618769 (-) 774 WP_324643254.1 TatD family hydrolase -
  DGAOKPDK_RS07675 (VOI31_RS07690) - 1618787..1619128 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  DGAOKPDK_RS07680 (VOI31_RS07695) - 1619140..1620120 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  DGAOKPDK_RS07685 (VOI31_RS07700) kdsB 1620132..1620893 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=921052 DGAOKPDK_RS07655 WP_000836911.1 1616416..1616796(-) (xcpV) [Acinetobacter baumannii strain EMB-1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=921052 DGAOKPDK_RS07655 WP_000836911.1 1616416..1616796(-) (xcpV) [Acinetobacter baumannii strain EMB-1]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACAAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1