Detailed information NTG0921051

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: DGAOKPDK_RS07650
• Genome accession: NZ_CP142019
• Coordinates: 1615715..1616416 (-)
• Length: 233 a.a.
• NCBI ID: WP_004747380.1
• Uniprot ID: A0A9E9PDK8
• Organism: Acinetobacter baumannii strain EMB-1
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1610715..1621416

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DGAOKPDK_RS07620 (VOI31_RS07635)	-	1611022..1611465 (-)	444	WP_001246675.1	SRPBCC family protein	-
DGAOKPDK_RS07625 (VOI31_RS07640)	tadA	1611535..1612038 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
DGAOKPDK_RS07630 (VOI31_RS07645)	-	1612045..1613169 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
DGAOKPDK_RS07635 (VOI31_RS07650)	ung	1613166..1613879 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
DGAOKPDK_RS07640 (VOI31_RS07655)	-	1613930..1614526 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
DGAOKPDK_RS07645 (VOI31_RS07660)	gspK	1614756..1615715 (-)	960	WP_005128789.1	type II secretion system minor pseudopilin GspK	-
DGAOKPDK_RS07650 (VOI31_RS07665)	xcpW	1615715..1616416 (-)	702	WP_004747380.1	type II secretion system minor pseudopilin GspJ	Machinery gene
DGAOKPDK_RS07655 (VOI31_RS07670)	xcpV	1616416..1616796 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
DGAOKPDK_RS07660 (VOI31_RS07675)	-	1616786..1617340 (-)	555	WP_005128793.1	type II secretion system protein	-
DGAOKPDK_RS07665 (VOI31_RS07680)	-	1617350..1617958 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
DGAOKPDK_RS07670 (VOI31_RS07685)	-	1617996..1618769 (-)	774	WP_324643254.1	TatD family hydrolase	-
DGAOKPDK_RS07675 (VOI31_RS07690)	-	1618787..1619128 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
DGAOKPDK_RS07680 (VOI31_RS07695)	-	1619140..1620120 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
DGAOKPDK_RS07685 (VOI31_RS07700)	kdsB	1620132..1620893 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26629.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=921051 DGAOKPDK_RS07650 WP_004747380.1 1615715..1616416(-) (xcpW) [Acinetobacter baumannii strain EMB-1]
MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=921051 DGAOKPDK_RS07650 WP_004747380.1 1615715..1616416(-) (xcpW) [Acinetobacter baumannii strain EMB-1]
ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996