Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VFH86_RS16410 Genome accession   NZ_CP142015
Coordinates   814699..815868 (-) Length   389 a.a.
NCBI ID   WP_133320107.1    Uniprot ID   -
Organism   Vibrio cholerae strain LK-18     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 809699..820868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFH86_RS16405 (VFH86_16405) cqsS 812554..814614 (+) 2061 WP_080006724.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  VFH86_RS16410 (VFH86_16410) cqsA 814699..815868 (-) 1170 WP_133320107.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VFH86_RS16415 (VFH86_16415) - 816065..817027 (-) 963 WP_001104014.1 TDT family transporter -
  VFH86_RS16420 (VFH86_16420) clcA 817174..818580 (-) 1407 WP_000107452.1 H(+)/Cl(-) exchange transporter ClcA -
  VFH86_RS16425 (VFH86_16425) - 819047..820036 (+) 990 WP_345659053.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43815.08 Da        Isoelectric Point: 6.6781

>NTDB_id=920962 VFH86_RS16410 WP_133320107.1 814699..815868(-) (cqsA) [Vibrio cholerae strain LK-18]
MNKPQLPDFIQDKIDHFIENFIAINKNGKHLVLGKHASNEDIILQSNDYLSLANHPLIKAHLAKSLLEEHQSLFMSAIFL
QSDYDKPPIESRLAKFTGFKECLLSQSGWCANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAKIHPFMHNNCDHLRT
LIQRYGPGIIAVDSIYSTIGTLAPLTELVRISQEYGCALLVDESHSLGTHGPKGSGLLAELNLTDEVHFMTASLAKTFSY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLESTLEIIECSDDKRKKLERMSRKLRIGLTQLGLTIRSESQIISL
ETGDERNTEKVRDFLESNGLFGSVFCRPATTKNKNIIRFSLNSDVTDEQITRIIEICSDAVKRSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=920962 VFH86_RS16410 WP_133320107.1 814699..815868(-) (cqsA) [Vibrio cholerae strain LK-18]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGGACAAAATCGACCACTTTATTGAAAACTTTATTGCCATAAACAAAAA
TGGAAAACATTTAGTGCTGGGTAAGCATGCCAGCAATGAGGATATTATTTTACAAAGCAATGATTATCTCTCCTTGGCTA
ATCATCCATTGATTAAAGCTCACTTAGCAAAGTCATTACTAGAAGAACATCAAAGCCTGTTTATGTCAGCGATCTTTTTA
CAAAGTGATTATGACAAACCACCAATCGAAAGCCGACTGGCTAAATTCACAGGTTTCAAAGAATGTCTGTTATCCCAATC
GGGCTGGTGCGCTAACGTGGGCCTTTTACAGACAATTTGCCAACCGAATACCAATGTATATATCGATTTCTTTGCTCACA
TGTCACTGTGGGAGGGAGCACGTTATGCGAATGCAAAAATACACCCTTTTATGCATAACAACTGCGATCATTTACGCACA
TTAATTCAACGTTACGGCCCTGGAATTATAGCTGTTGACTCCATCTATAGCACAATAGGAACTCTGGCACCGTTAACAGA
ATTAGTCAGAATCAGTCAGGAGTACGGTTGTGCTTTGTTAGTGGATGAATCTCATTCTCTAGGCACGCATGGTCCGAAAG
GTTCTGGTTTACTCGCGGAGTTGAATCTCACTGATGAGGTGCATTTTATGACTGCCAGTTTAGCCAAAACGTTTTCCTAT
CGAGCTGGAGCCATTTGGTGCAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCGGCTATTTTTAGCTCTAC
TTTGCTGCCCTATGAAGCAGCTGGATTGGAAAGTACATTGGAAATTATTGAATGTTCAGATGACAAACGAAAAAAACTAG
AACGTATGTCGAGAAAATTACGTATTGGATTAACCCAACTTGGCTTAACCATCCGTAGTGAAAGCCAGATTATCAGCCTA
GAAACTGGAGATGAAAGAAATACCGAAAAAGTGCGTGACTTCCTAGAGAGTAATGGATTATTTGGGTCAGTATTTTGTAG
GCCGGCCACCACAAAAAATAAAAACATTATTCGTTTCTCACTTAATAGTGATGTGACCGATGAACAGATAACGAGAATAA
TTGAGATCTGTTCTGATGCAGTGAAGCGCAGTGATTTTTACTTTCGCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

85.861

100

0.859