Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   VFH86_RS16405 Genome accession   NZ_CP142015
Coordinates   812554..814614 (+) Length   686 a.a.
NCBI ID   WP_080006724.1    Uniprot ID   -
Organism   Vibrio cholerae strain LK-18     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 807554..819614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFH86_RS16395 (VFH86_16395) - 808275..809414 (+) 1140 WP_114709077.1 exonuclease SbcCD subunit D -
  VFH86_RS16400 (VFH86_16400) - 809416..812457 (+) 3042 WP_345659052.1 SMC family ATPase -
  VFH86_RS16405 (VFH86_16405) cqsS 812554..814614 (+) 2061 WP_080006724.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  VFH86_RS16410 (VFH86_16410) cqsA 814699..815868 (-) 1170 WP_133320107.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VFH86_RS16415 (VFH86_16415) - 816065..817027 (-) 963 WP_001104014.1 TDT family transporter -
  VFH86_RS16420 (VFH86_16420) clcA 817174..818580 (-) 1407 WP_000107452.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78239.95 Da        Isoelectric Point: 5.2045

>NTDB_id=920961 VFH86_RS16405 WP_080006724.1 812554..814614(+) (cqsS) [Vibrio cholerae strain LK-18]
MIVSMDVIKRVYRYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQDYENLGLRLAASALFAVLAFRDSLPKKWQCYLPYYYL
LTIGFCLPFFFSFMMLMNNWSTIWAMSFMASIFLHILLVHDTRVMAIQALSSIGLSYLVVYGIADSQPSTLIEWPFMPIF
LFTYVFGNLFFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKASIDVVRTMVPKPQAAAQGEYALDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFDFFGSDTLLTYALFN
LLKNAFYYQKEHFSVRITIEQTSEQNLIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCAS
QQGQWTEFVLSFPRYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNHLAVDDEFGFTAISAQQAVRRQDYEFEFDLILL
DLDDATTQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNINRYLHIQPISIHSILRKPRKIIERLLFEQDSLSMNRNVIP
LQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRGSEYDY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWI

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=920961 VFH86_RS16405 WP_080006724.1 812554..814614(+) (cqsS) [Vibrio cholerae strain LK-18]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCGATATGCAGAACCTAATCTGTCCTTAGTTGGATGGATGGGGAT
GCTTGGCTTTCCTGCCTACTACTTTATTTGGGAATATTGGTTTCCACAGGACTATGAGAACCTAGGCTTACGCCTTGCTG
CCTCTGCGTTATTTGCAGTACTTGCATTTCGAGATTCTTTACCCAAAAAATGGCAGTGCTATTTGCCATACTATTATTTG
TTGACGATAGGTTTCTGCTTGCCTTTCTTCTTCTCTTTCATGATGTTGATGAATAACTGGTCAACAATTTGGGCGATGTC
GTTCATGGCGTCCATTTTCTTGCATATTCTCCTAGTACACGATACCAGAGTGATGGCGATACAAGCGTTGTCCTCTATTG
GATTATCCTACCTCGTTGTGTACGGTATAGCCGATTCTCAACCATCGACGTTGATCGAATGGCCATTTATGCCGATATTT
TTATTCACGTATGTGTTTGGGAATCTGTTCTTTTTTCGTAACCAGATCTCTCATGAAACCAAAGTATCGATTGCCAAAAC
GTTTGGTGCAGGGATTGCCCACGAAATGCGTAATCCACTCAGTGCCTTGAAAGCGTCGATTGATGTTGTGCGAACCATGG
TCCCCAAGCCGCAAGCAGCCGCTCAGGGAGAGTATGCTTTGGATGCGCAAGAGCTGGATCTACTGCATCAAATTTTGAAT
GAAGCTGATGATGTCATTTACTCTGGCAATAACGCGATTGATTTGCTGCTCACCTCGATTGATGAAAACCGCGTTTCGCC
GGCGAGTTTTAAAAAACACTCAGTAGTGGATGTGATTGAAAAAGCGGTGAAAACCTTCCCGTATAAAAATGCAGCGGATC
AGCACTCGGTAGAGCTTGAAGTGCATCAGCCGTTTGACTTTTTTGGCAGTGATACTCTACTGACCTATGCGTTATTTAAC
CTGTTGAAAAATGCCTTCTATTATCAAAAAGAGCATTTTTCAGTTCGTATTACCATTGAACAAACCAGTGAGCAGAACCT
TATCCGAGTCCGTGATAACGGCGTGGGGATTGCGCCAGAGATGTTGGAAGACATTTTCCGTGATTTCTATACCTTCGGTA
AAAATGGCAGCTATGGGCTAGGATTGCCATTTTGCCGCAAAGTGATGACCGCATTTGGAGGGACGATTCGCTGTGCGTCT
CAACAAGGTCAGTGGACAGAATTCGTATTGAGCTTTCCTCGTTACGATTCCGATACGGTTAACGAGATAAAAACAGAACT
GCTGAAAACCAAATCGCTCATTTATATCGGCTCAAATCAAGCTATCGTTCGAGAGTTAAATCATCTCGCGGTGGACGATG
AGTTTGGCTTTACTGCCATTTCTGCACAGCAAGCAGTAAGACGCCAAGATTATGAGTTTGAGTTCGACCTTATTTTGCTC
GACCTTGATGACGCCACTACGCAGGGAGAACTACTGCCGAAACTTGAAGGTACATTGAGTTTTGCAGAAGGCTGTATCGG
CTATGTGTATGACCCGGGTAAAACGTACGCGGTAAACATTAACCGTTATCTGCACATTCAGCCGATCAGTATTCACTCTA
TTCTCAGAAAGCCGCGGAAAATCATCGAGCGCTTGTTGTTCGAGCAAGATTCTTTATCGATGAATCGTAATGTGATCCCC
TTGCAAAAGAGTCGACATGAACGGCGTATTTTGGTGGTTGACGATAATCAATCGATCCGAACTTTTACGGCTATTTTGCT
TGAGCAACAAGGTTATGAAGTGGTGCAAGCCAACGATGGTAGTGAAGTGCTCAAGCATATGGAGAGTCAAAACATCGATT
TAGTGTTGATGGACATTGAAATGCCGAATGTCGGGGGATTAGAAGCGACGCGTTTAATTCGTGGCTCTGAGTATGATTAC
AAAAATATTCCGATCATTGGTTACACCGGTGATAACAGCCCCAAAACCTTGGCTCTGGTACAAACCTCTGGCATGAATGA
TTTCATTGTGAAGCCTGCTGACCGTGATGTATTGCTAAATAAAGTGGCAGCTTGGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(570-682)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

92.42

100

0.924