Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV56_RS13155 Genome accession   NZ_AP025492
Coordinates   2981498..2982103 (+) Length   201 a.a.
NCBI ID   WP_086711963.1    Uniprot ID   A0A7Y3YN51
Organism   Vibrio gigantis strain LMG 22741     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2976498..2987103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS13135 - 2976731..2977648 (-) 918 WP_086711959.1 ABC transporter ATP-binding protein -
  OCV56_RS13140 - 2977970..2979601 (-) 1632 WP_190960481.1 SulP family inorganic anion transporter -
  OCV56_RS13145 can 2979888..2980556 (+) 669 WP_086711961.1 carbonate dehydratase -
  OCV56_RS13150 hpt 2980630..2981160 (-) 531 WP_086711962.1 hypoxanthine phosphoribosyltransferase -
  OCV56_RS13155 opaR 2981498..2982103 (+) 606 WP_086711963.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV56_RS13160 lpdA 2982314..2983744 (-) 1431 WP_086711964.1 dihydrolipoyl dehydrogenase -
  OCV56_RS13165 aceF 2983987..2985879 (-) 1893 WP_086711965.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23252.51 Da        Isoelectric Point: 6.4921

>NTDB_id=92096 OCV56_RS13155 WP_086711963.1 2981498..2982103(+) (opaR) [Vibrio gigantis strain LMG 22741]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTNEELSKLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=92096 OCV56_RS13155 WP_086711963.1 2981498..2982103(+) (opaR) [Vibrio gigantis strain LMG 22741]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCTCTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
AGTATTCTCTCGCCGTGGCATTGGCCGTGGCGGACACGCTGATATTGCAGACATCGCTCAGGTGTCAGTAGCAACCGTAT
TTAACTACTTCCCTACTCGTGAAGATCTGGTTGATGAAGTACTGAATCACGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTAAATGTATGGTTCGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCGCTGTTCGTAACAACTAACC
GAACTAACCAAATGTTAGTACAAAACATGTTTAGTAAAGCGATTGAGCGCGGCGAAGTTTGCGACGATCACGATCCTAAA
CATCTAGCAAACCTATTCCACGGCATCTGCTACTCGCTATTTATCCAAGCGAAACGTGTCGATACCAATGAAGAGCTGTC
TAAACTTACTGACAGCTACTTAAACATGTTGTGTATCTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y3YN51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

73.869

99.005

0.731
  hapR Vibrio cholerae strain A1552

73.869

99.005

0.731

Multiple sequence alignment