Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   VFH86_RS15960 Genome accession   NZ_CP142015
Coordinates   677322..678416 (+) Length   364 a.a.
NCBI ID   WP_001907859.1    Uniprot ID   Q25QW7
Organism   Vibrio cholerae strain LK-18     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 672322..683416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFH86_RS15930 (VFH86_15930) - 673482..673733 (-) 252 WP_001885413.1 YgjV family protein -
  VFH86_RS15935 (VFH86_15935) - 674146..674466 (-) 321 WP_001089529.1 DUF496 family protein -
  VFH86_RS15940 (VFH86_15940) - 674654..674851 (+) 198 WP_001246071.1 hypothetical protein -
  VFH86_RS15945 (VFH86_15945) - 674893..675543 (+) 651 WP_001025625.1 YceH family protein -
  VFH86_RS15950 (VFH86_15950) - 675543..675848 (+) 306 WP_345659038.1 GIY-YIG nuclease family protein -
  VFH86_RS15955 (VFH86_15955) traF 675950..677110 (+) 1161 WP_142735367.1 conjugal transfer protein TraF -
  VFH86_RS15960 (VFH86_15960) luxP 677322..678416 (+) 1095 WP_001907859.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  VFH86_RS15965 (VFH86_15965) luxQ 678434..681007 (+) 2574 WP_001026311.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  VFH86_RS15970 (VFH86_15970) - 680999..681664 (-) 666 WP_000268201.1 flagellar brake protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41227.89 Da        Isoelectric Point: 6.5074

>NTDB_id=920958 VFH86_RS15960 WP_001907859.1 677322..678416(+) (luxP) [Vibrio cholerae strain LK-18]
MKRKLISPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=920958 VFH86_RS15960 WP_001907859.1 677322..678416(+) (luxP) [Vibrio cholerae strain LK-18]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATGGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTCCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAAGGGTATATCAGTGAAGCGC
GGGGAGATACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGTTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCGGCTG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCCGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATCGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q25QW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.626

100

0.986