Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   AB3W22_RS27130 Genome accession   NZ_CP162335
Coordinates   5835217..5835741 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain 1001d0_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5830217..5840741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3W22_RS27115 (AB3W22_27115) aroB 5831345..5832451 (-) 1107 WP_016253983.1 3-dehydroquinate synthase -
  AB3W22_RS27120 (AB3W22_27120) aroK 5832501..5833019 (-) 519 WP_003095833.1 shikimate kinase AroK -
  AB3W22_RS27125 (AB3W22_27125) pilQ 5833031..5835163 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  AB3W22_RS27130 (AB3W22_27130) comL/pilP 5835217..5835741 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  AB3W22_RS27135 (AB3W22_27135) pilO 5835738..5836361 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB3W22_RS27140 (AB3W22_27140) pilN 5836358..5836954 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  AB3W22_RS27145 (AB3W22_27145) pilM 5836954..5838018 (-) 1065 WP_034024943.1 type IV pilus assembly protein PilM Machinery gene
  AB3W22_RS27150 (AB3W22_27150) - 5838203..5840671 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=920940 AB3W22_RS27130 WP_003116136.1 5835217..5835741(-) (comL/pilP) [Pseudomonas aeruginosa strain 1001d0_1]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=920940 AB3W22_RS27130 WP_003116136.1 5835217..5835741(-) (comL/pilP) [Pseudomonas aeruginosa strain 1001d0_1]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362