Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV56_RS10820 Genome accession   NZ_AP025492
Coordinates   2475340..2476728 (-) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio gigantis strain LMG 22741     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2470340..2481728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS10785 moaE 2470879..2471334 (-) 456 WP_086712938.1 molybdopterin synthase catalytic subunit MoaE -
  OCV56_RS10790 moaD 2471337..2471582 (-) 246 WP_055319720.1 molybdopterin synthase sulfur carrier subunit -
  OCV56_RS10795 moaC 2471579..2472058 (-) 480 WP_086712939.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV56_RS10800 moaB 2472071..2472583 (-) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  OCV56_RS10805 moaA 2472674..2473663 (-) 990 WP_086712940.1 GTP 3',8-cyclase MoaA -
  OCV56_RS10810 - 2473999..2474886 (+) 888 WP_086712941.1 YvcK family protein -
  OCV56_RS10815 luxU 2474971..2475315 (-) 345 WP_048611583.1 quorum-sensing phosphorelay protein LuxU -
  OCV56_RS10820 luxO 2475340..2476728 (-) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV56_RS10825 uvrB 2477032..2479062 (-) 2031 WP_086712942.1 excinuclease ABC subunit UvrB -
  OCV56_RS10835 rsxA 2480122..2480700 (+) 579 WP_004734039.1 electron transport complex subunit RsxA -
  OCV56_RS10840 rsxB 2480703..2481296 (+) 594 WP_004734040.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=92094 OCV56_RS10820 WP_004734031.1 2475340..2476728(-) (luxO) [Vibrio gigantis strain LMG 22741]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=92094 OCV56_RS10820 WP_004734031.1 2475340..2476728(-) (luxO) [Vibrio gigantis strain LMG 22741]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACGGCTTCGGTAGCAGCGTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATAGTCGGCACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTTTGCCTGATATGACGGGTATGGACGTATTATTTGCTGTAAAACAAAAATAC
CCTGAAGTTCCTGTTATTTTCATGACGGCTCACGGCTCTATCGATACCGCCGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAGCCGTGTGAAGCTGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAGCTTAAAA
ACAGCTCTGAACATCCGGGAAATCAGAACTATCAAGGTTTCATTGGTAGCAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGATTCTGCTGCATCAAGTAAGGCGAGCATTTTCATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
GATTCATGCGGCGAGCAAGCGTGGTGACAAGCCTTTCATTGCGATTAACTGTGCGGCGATTCCTAAAGATCTGATTGAAA
GTGAGCTGTTTGGTCACGTTAAAGGCGCCTTTACTGGTGCGGCAACTGACCGCCAAGGGGCTGCTGAACTTGCTGATGGT
GGGACACTGTTCCTCGATGAGTTGTGCGAAATGGATCTTGAGCTGCAAACTAAGCTTCTTCGTTTCATTCAAACCGGTAC
CTTCCAAAAAGTCGGCTCTTCAAAAATGAAGAGTGTTGATGTGCGCTTTGTTTGTGCAACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCGCTGCACTTGCCGCCATTGCGCGAG
CGCGGAGAAGATGTCATCGAGATTGCCTACTCGCTACTAGGTTATATGTCGGTCGAGGAAGGGAAGGCGTTTGTACGTTT
TGCTCAAGAAGTGCTGGATCGTTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGTTGCAAAACGTATTGCGAAACG
TGGTGGTTTTGAATAATGGTAAAGAGATTACTCTTAACATGCTTCCCCCCCCCTTGAACCAACCGATTGAAAACAGTCTG
CGATTGAAAGAGAAGCAGAATGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAGGCCATCAAAGCATGTGATGGTAACATCCCTCGTGCGGCAGGTTTTTTAGATGTCAGTCCGTCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment