Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VML59_RS18940 Genome accession   NZ_CP142003
Coordinates   3661784..3663523 (-) Length   579 a.a.
NCBI ID   WP_000947752.1    Uniprot ID   A0A3P1C6F5
Organism   Bacillus pacificus strain AT31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3656784..3668523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS18915 - 3657832..3658065 (+) 234 WP_001190192.1 DUF2627 domain-containing protein -
  VML59_RS18920 - 3658115..3658843 (-) 729 WP_000172558.1 glycerophosphodiester phosphodiesterase -
  VML59_RS18925 - 3658894..3659040 (+) 147 WP_001247671.1 YycC family protein -
  VML59_RS18930 spo0A 3659285..3660079 (-) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  VML59_RS18935 spoIVB 3660367..3661665 (-) 1299 WP_002028467.1 SpoIVB peptidase -
  VML59_RS18940 recN 3661784..3663523 (-) 1740 WP_000947752.1 DNA repair protein RecN Machinery gene
  VML59_RS18945 argR 3663791..3664240 (-) 450 WP_001032581.1 arginine repressor ArgR -
  VML59_RS18950 - 3664383..3665222 (-) 840 WP_001274742.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  VML59_RS18955 dxs 3665226..3667118 (-) 1893 WP_000366448.1 1-deoxy-D-xylulose-5-phosphate synthase -
  VML59_RS18960 ispA 3667421..3668311 (-) 891 WP_000150362.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65793.86 Da        Isoelectric Point: 4.8260

>NTDB_id=920819 VML59_RS18940 WP_000947752.1 3661784..3663523(-) (recN) [Bacillus pacificus strain AT31]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=920819 VML59_RS18940 WP_000947752.1 3661784..3663523(-) (recN) [Bacillus pacificus strain AT31]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGGCTATTTTATGTGGAAGATGATAAGCATCCATGTATTGAAAAA
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAACACG
AAACGCAAGACTTAATGAATGAAGAACGTCATTTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTA
GATATATACCAAAACGTATATGCTGACTATGAGAAATTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAAGCTGATTTAAAGATGGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAGATTTATAAAGCATTAGGTGACGCGTATCGCTCGTTAAGTGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCCAATAGTTATTATTTATTAGAAGAAGTTGCGTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGCTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATCATG
AAGCGAGAAGGAAATGCAGAAGAGCCTCTCGTGGAGGGAGCACCGGTAAGACTTACAGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACAAATCCGGGTGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCCCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAGATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCAAATGATCGAACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P1C6F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601