Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   VML59_RS18930 Genome accession   NZ_CP142003
Coordinates   3659285..3660079 (-) Length   264 a.a.
NCBI ID   WP_014297988.1    Uniprot ID   A0A1J9YJW5
Organism   Bacillus pacificus strain AT31     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3654285..3665079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS18905 yqiS 3654528..3655427 (-) 900 WP_000763072.1 phosphate butyryltransferase -
  VML59_RS18910 - 3655623..3657695 (-) 2073 WP_000811006.1 sigma-54 interaction domain-containing protein -
  VML59_RS18915 - 3657832..3658065 (+) 234 WP_001190192.1 DUF2627 domain-containing protein -
  VML59_RS18920 - 3658115..3658843 (-) 729 WP_000172558.1 glycerophosphodiester phosphodiesterase -
  VML59_RS18925 - 3658894..3659040 (+) 147 WP_001247671.1 YycC family protein -
  VML59_RS18930 spo0A 3659285..3660079 (-) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  VML59_RS18935 spoIVB 3660367..3661665 (-) 1299 WP_002028467.1 SpoIVB peptidase -
  VML59_RS18940 recN 3661784..3663523 (-) 1740 WP_000947752.1 DNA repair protein RecN Machinery gene
  VML59_RS18945 argR 3663791..3664240 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29454.20 Da        Isoelectric Point: 7.4719

>NTDB_id=920818 VML59_RS18930 WP_014297988.1 3659285..3660079(-) (spo0A) [Bacillus pacificus strain AT31]
MEKIKVCLVDDNKELVSMLESYVAAQEDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=920818 VML59_RS18930 WP_014297988.1 3659285..3660079(-) (spo0A) [Bacillus pacificus strain AT31]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
GGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTTG
TATTAGATATTATTATGCCACATTTAGATGGGTTAGCTGTACTAGAGAAAATGCGCCACATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCGTTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCGTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAAGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCAAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGGGCAATCC
GTCACGCAATTGAGGTAGCATGGAGTCGCGGGAATATCGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9YJW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

81.273

100

0.822