Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VML59_RS06130 Genome accession   NZ_CP142003
Coordinates   1216975..1218801 (+) Length   608 a.a.
NCBI ID   WP_000003391.1    Uniprot ID   A0A1J9XWP8
Organism   Bacillus pacificus strain AT31     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1211975..1223801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS06110 - 1212285..1212959 (-) 675 WP_000362602.1 TerC family protein -
  VML59_RS06115 mecA 1213299..1213982 (+) 684 WP_000350722.1 adaptor protein MecA Regulator
  VML59_RS06120 - 1214055..1215599 (+) 1545 WP_000799204.1 cardiolipin synthase -
  VML59_RS06125 - 1215680..1216924 (+) 1245 WP_074567615.1 competence protein CoiA -
  VML59_RS06130 pepF 1216975..1218801 (+) 1827 WP_000003391.1 oligoendopeptidase F Regulator
  VML59_RS06135 - 1218919..1219092 (-) 174 WP_074567614.1 hypothetical protein -
  VML59_RS06140 - 1219322..1220215 (-) 894 WP_000360652.1 ClpXP adapter SpxH family protein -
  VML59_RS06145 - 1220215..1220613 (-) 399 WP_000043381.1 hypothetical protein -
  VML59_RS06150 - 1220794..1221372 (-) 579 WP_000191109.1 CYTH domain-containing protein -
  VML59_RS06155 - 1221519..1221890 (+) 372 WP_001180003.1 hypothetical protein -
  VML59_RS06160 - 1221921..1222559 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  VML59_RS06165 - 1222578..1223375 (+) 798 WP_000673185.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70303.57 Da        Isoelectric Point: 4.6418

>NTDB_id=920805 VML59_RS06130 WP_000003391.1 1216975..1218801(+) (pepF) [Bacillus pacificus strain AT31]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEQEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVQSVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=920805 VML59_RS06130 WP_000003391.1 1216975..1218801(+) (pepF) [Bacillus pacificus strain AT31]
ATGTCTGAACAAAACACAGCAAAAACATTACCGGATCGTAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAACAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGTGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACATTGCAAACATTCTTGA
AAGAAAATAGAGAATTAAGTGTATATGAACATGCGTTAGAAGAAATTACGCGTCAACGCCCTCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATTACACATGGCCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTAAAGCGTAATAATTTCAATGCACGTGTTCGTAAATATGACTCTGCACGTCAAGCAGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTCAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTGGGTGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGCCATTCT
GTCCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGGGATTATTCAATCTTCGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTAACACCAGACATGCTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTATCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9XWP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488