Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VDS58_RS13570 Genome accession   NZ_CP141997
Coordinates   2495460..2497190 (-) Length   576 a.a.
NCBI ID   WP_072173936.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2490460..2502190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS13545 (VDS58_13545) yqiH 2490517..2490810 (-) 294 WP_003230284.1 lipoprotein -
  VDS58_RS13550 (VDS58_13550) - 2491118..2491270 (+) 153 WP_014480226.1 hypothetical protein -
  VDS58_RS13555 (VDS58_13555) yqiG 2491343..2492461 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  VDS58_RS13560 (VDS58_13560) spo0A 2492926..2493729 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  VDS58_RS13565 (VDS58_13565) spoIVB 2494005..2495285 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  VDS58_RS13570 (VDS58_13570) recN 2495460..2497190 (-) 1731 WP_072173936.1 DNA repair protein RecN Machinery gene
  VDS58_RS13575 (VDS58_13575) argR 2497227..2497676 (-) 450 WP_014114358.1 arginine repressor ArgR -
  VDS58_RS13580 (VDS58_13580) yqxC 2497774..2498619 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  VDS58_RS13585 (VDS58_13585) dxs 2498616..2500517 (-) 1902 WP_015384069.1 1-deoxy-D-xylulose-5-phosphate synthase -
  VDS58_RS13590 (VDS58_13590) ispA 2500692..2501582 (-) 891 WP_003230262.1 polyprenyl synthetase family protein -
  VDS58_RS13595 (VDS58_13595) xseB 2501572..2501826 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64522.43 Da        Isoelectric Point: 4.8041

>NTDB_id=920724 VDS58_RS13570 WP_072173936.1 2495460..2497190(-) (recN) [Bacillus subtilis strain PM0031]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDKQLQEERQEISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=920724 VDS58_RS13570 WP_072173936.1 2495460..2497190(-) (recN) [Bacillus subtilis strain PM0031]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATTATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGATACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATAAACAGCTCC
AAGAAGAGCGCCAGGAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCTTCAGCGCAGCTTGAAGATATCTCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCTTGAACTATATTGAGACACGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTCGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAGTTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTCTCCTCACAACAGGATGTGACATCGATCATTTTTGACGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGACGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993