Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   VDS58_RS13560 Genome accession   NZ_CP141997
Coordinates   2492926..2493729 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2487926..2498729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS13535 (VDS58_13535) glpQB 2489072..2489803 (-) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -
  VDS58_RS13540 (VDS58_13540) yqiI 2489882..2490502 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  VDS58_RS13545 (VDS58_13545) yqiH 2490517..2490810 (-) 294 WP_003230284.1 lipoprotein -
  VDS58_RS13550 (VDS58_13550) - 2491118..2491270 (+) 153 WP_014480226.1 hypothetical protein -
  VDS58_RS13555 (VDS58_13555) yqiG 2491343..2492461 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  VDS58_RS13560 (VDS58_13560) spo0A 2492926..2493729 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  VDS58_RS13565 (VDS58_13565) spoIVB 2494005..2495285 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  VDS58_RS13570 (VDS58_13570) recN 2495460..2497190 (-) 1731 WP_072173936.1 DNA repair protein RecN Machinery gene
  VDS58_RS13575 (VDS58_13575) argR 2497227..2497676 (-) 450 WP_014114358.1 arginine repressor ArgR -
  VDS58_RS13580 (VDS58_13580) yqxC 2497774..2498619 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=920723 VDS58_RS13560 WP_003226427.1 2492926..2493729(-) (spo0A) [Bacillus subtilis strain PM0031]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=920723 VDS58_RS13560 WP_003226427.1 2492926..2493729(-) (spo0A) [Bacillus subtilis strain PM0031]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCAGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1