Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VDS58_RS09700 Genome accession   NZ_CP141997
Coordinates   1837688..1838938 (+) Length   416 a.a.
NCBI ID   WP_122894525.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1832688..1843938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS09670 (VDS58_09670) yfmH 1832778..1834064 (+) 1287 WP_003244823.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  VDS58_RS09675 (VDS58_09675) ymfI 1834119..1834847 (+) 729 WP_015715897.1 elongation factor P 5-aminopentanone reductase -
  VDS58_RS09680 (VDS58_09680) ymfJ 1834928..1835185 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  VDS58_RS09685 (VDS58_09685) - 1835315..1836106 (+) 792 WP_003220998.1 DUF3388 domain-containing protein -
  VDS58_RS09690 (VDS58_09690) rodZ 1836125..1837039 (+) 915 WP_003244699.1 cell shape determination protein RodZ -
  VDS58_RS09695 (VDS58_09695) pgsA 1837089..1837670 (+) 582 WP_122894526.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VDS58_RS09700 (VDS58_09700) cinA 1837688..1838938 (+) 1251 WP_122894525.1 competence/damage-inducible protein A Machinery gene
  VDS58_RS09705 (VDS58_09705) recA 1839110..1840156 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  VDS58_RS09710 (VDS58_09710) pbpX 1840324..1841499 (+) 1176 WP_122894524.1 serine hydrolase domain-containing protein -
  VDS58_RS09715 (VDS58_09715) rny 1841775..1843337 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45523.82 Da        Isoelectric Point: 5.3714

>NTDB_id=920719 VDS58_RS09700 WP_122894525.1 1837688..1838938(+) (cinA) [Bacillus subtilis strain PM0031]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKDTLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=920719 VDS58_RS09700 WP_122894525.1 1837688..1838938(+) (cinA) [Bacillus subtilis strain PM0031]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGTAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGACACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.76

100

0.998
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375