Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VDS58_RS09305 Genome accession   NZ_CP141997
Coordinates   1757973..1758752 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain PM0031     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752973..1763752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS09285 (VDS58_09285) trmFO 1753666..1754973 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VDS58_RS09290 (VDS58_09290) xerC 1755041..1755955 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  VDS58_RS09295 (VDS58_09295) clpQ 1755968..1756513 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  VDS58_RS09300 (VDS58_09300) hslU 1756530..1757933 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  VDS58_RS09305 (VDS58_09305) codY 1757973..1758752 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VDS58_RS09310 (VDS58_09310) flgB 1759132..1759521 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  VDS58_RS09315 (VDS58_09315) flgC 1759521..1759973 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  VDS58_RS09320 (VDS58_09320) fliE 1759984..1760304 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  VDS58_RS09325 (VDS58_09325) fliF 1760350..1761960 (+) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  VDS58_RS09330 (VDS58_09330) fliG 1761973..1762989 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  VDS58_RS09335 (VDS58_09335) fliH 1762982..1763734 (+) 753 WP_185157875.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=920718 VDS58_RS09305 WP_003220850.1 1757973..1758752(+) (codY) [Bacillus subtilis strain PM0031]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=920718 VDS58_RS09305 WP_003220850.1 1757973..1758752(+) (codY) [Bacillus subtilis strain PM0031]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467