Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VDS58_RS09275 Genome accession   NZ_CP141997
Coordinates   1750434..1751327 (+) Length   297 a.a.
NCBI ID   WP_231834269.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1745434..1756327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS09255 (VDS58_09255) - 1746104..1747834 (+) 1731 WP_021479298.1 hypothetical protein -
  VDS58_RS09260 (VDS58_09260) ylqH 1747831..1748112 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  VDS58_RS09265 (VDS58_09265) sucC 1748285..1749442 (+) 1158 WP_159376798.1 ADP-forming succinate--CoA ligase subunit beta -
  VDS58_RS09270 (VDS58_09270) sucD 1749471..1750373 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  VDS58_RS09275 (VDS58_09275) dprA 1750434..1751327 (+) 894 WP_231834269.1 DNA-processing protein DprA Machinery gene
  VDS58_RS09280 (VDS58_09280) topA 1751515..1753590 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  VDS58_RS09285 (VDS58_09285) trmFO 1753666..1754973 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VDS58_RS09290 (VDS58_09290) xerC 1755041..1755955 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32937.24 Da        Isoelectric Point: 9.9142

>NTDB_id=920717 VDS58_RS09275 WP_231834269.1 1750434..1751327(+) (dprA) [Bacillus subtilis strain PM0031]
MDQTAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILVSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEEIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=920717 VDS58_RS09275 WP_231834269.1 1750434..1751327(+) (dprA) [Bacillus subtilis strain PM0031]
TTGGATCAGACCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGACGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGGTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCACTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGAGATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Legionella pneumophila strain ERS1305867

37.793

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

41.353

89.562

0.37