Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   AB3L00_RS00955 Genome accession   NZ_CP162300
Coordinates   214654..217488 (-) Length   944 a.a.
NCBI ID   WP_000083355.1    Uniprot ID   A0A0D8FGA4
Organism   Acinetobacter baumannii strain SIMBA113     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 209654..222488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3L00_RS00945 (AB3L00_00945) omp33-36 211023..211922 (-) 900 WP_000733006.1 porin Omp33-36 -
  AB3L00_RS00950 (AB3L00_00950) - 212915..214620 (+) 1706 Protein_184 GGDEF domain-containing protein -
  AB3L00_RS00955 (AB3L00_00955) uvrA 214654..217488 (-) 2835 WP_000083355.1 excinuclease ABC subunit UvrA Machinery gene
  AB3L00_RS00960 (AB3L00_00960) - 217785..218387 (+) 603 WP_000826320.1 TetR/AcrR family transcriptional regulator -
  AB3L00_RS00965 (AB3L00_00965) - 218391..219368 (+) 978 WP_001256571.1 zinc-binding dehydrogenase -
  AB3L00_RS00970 (AB3L00_00970) - 219433..219786 (+) 354 WP_000580168.1 DUF1304 domain-containing protein -
  AB3L00_RS00975 (AB3L00_00975) - 219839..220180 (+) 342 WP_000263328.1 GlpM family protein -
  AB3L00_RS00980 (AB3L00_00980) tenA 220230..220904 (-) 675 WP_000899418.1 thiaminase II -
  AB3L00_RS00985 (AB3L00_00985) - 221167..222249 (+) 1083 WP_004833586.1 DUF475 domain-containing protein -

Sequence


Protein


Download         Length: 944 a.a.        Molecular weight: 104386.69 Da        Isoelectric Point: 6.5117

>NTDB_id=920705 AB3L00_RS00955 WP_000083355.1 214654..217488(-) (uvrA) [Acinetobacter baumannii strain SIMBA113]
MSQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSQMEKPEVDSIEG
LSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEHDLPMVAQTVSEMVDAVKNLEEGTALMLLAPVVRER
KGEYSNLFEQLQGQGFVRARVDGEIIDIDTPPELDKKKKHTIEVVVDRFKVRDDLGNRIAESFETALRLGGDIAVLSWMN
GEHPDRVFSAKHSCPECDRAVAELEPRLFSFNNPFGACPVCDGLGTRSHFSPEKLIPNPELAISEGAIRGWDRQRPYYYS
MLQKVADHFGFQLDTPWNQLDKDTQKKFLQGTGKEKIDLSYIDERGRKHTRVQPFEGILPHLERRYRETESNYVRDDLAQ
YLSNAACDACGGSRLNEISRHVRVKDKTIADITRMSIGDAESYYQGINLEGAKGEIADKIFKEIRERLHFLVSVGLNYLS
LARSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRLLQTLIRLRDLGNTVLVVEHDEDAIRAADHIID
IGPGAGVHGGVVIAEGTYDELAKHADSLTGQYLSGKLKIEVPKQRTQPPKPEEKIKLSGAAGHNLKNVDLTIPLGIMTCV
TGVSGSGKSTLINRTLLPLAATQLNGATTLTAEKFDSIDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAQT
PEAKARGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAE
FFSAIPVIHRRLETLTQVGLGYIRLGQAATTLSGGEAQRVKLARELAKRDTGKTLYILDEPTTGLHFHDIAKLLDILHEL
RNKGNTIVVIEHNLDVIKTADWVVDLGPEGGSGGGMIIAEGTPEQVAEVEISHTGRFLKPMLKQ

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=920705 AB3L00_RS00955 WP_000083355.1 214654..217488(-) (uvrA) [Acinetobacter baumannii strain SIMBA113]
ATGAGCCAAAGTCATATCCGTATTCGAGGCGCACGTACCCATAACTTAAAAAATGTGTCACTCGATATTCCACGCGACAA
ATTTGTGGTAATTACGGGGCTATCAGGTTCAGGAAAATCTTCTCTTGCCTTCGATACCTTGTACGCCGAAGGACAACGCC
GTTATGTCGAATCACTTTCGGCATATGCCCGTCAGTTTTTATCGCAAATGGAAAAACCTGAAGTCGACTCGATTGAAGGA
TTATCACCAGCCATTGCGATTGAGCAAAAGTCTACTAGCCATAACCCACGTTCAACGGTTGGTACGATTACCGAAATTTA
TGACTATTTGCGTCTGCTTTATGCACGTGTCGGTACGCCTTATTGCCCTGAACACGACTTACCTATGGTTGCGCAAACTG
TTTCTGAAATGGTCGATGCGGTAAAAAACCTTGAGGAAGGCACTGCACTCATGTTGCTTGCCCCTGTTGTTCGTGAGCGT
AAAGGTGAATACAGCAACTTGTTCGAACAACTACAAGGTCAAGGTTTCGTTCGTGCCCGTGTTGATGGTGAAATCATTGA
TATTGATACACCACCGGAACTCGACAAAAAGAAAAAACATACCATTGAAGTCGTTGTTGACCGCTTTAAAGTACGTGATG
ACTTAGGCAACCGTATTGCTGAATCATTTGAAACTGCACTGCGTTTAGGTGGCGATATTGCAGTTTTATCGTGGATGAAT
GGCGAACACCCAGATCGCGTTTTTTCTGCAAAACACTCATGCCCTGAATGTGATCGCGCAGTCGCAGAGCTTGAGCCACG
TTTATTTTCATTTAACAACCCGTTTGGTGCGTGCCCTGTCTGTGATGGCTTAGGTACACGTAGCCATTTCAGTCCTGAAA
AACTCATTCCTAACCCTGAGCTGGCAATTAGTGAAGGTGCTATCCGTGGTTGGGATCGTCAACGTCCTTATTACTATTCA
ATGCTGCAAAAAGTTGCCGACCATTTCGGTTTTCAACTGGATACACCTTGGAATCAGTTAGATAAAGACACGCAAAAGAA
ATTCTTACAAGGTACTGGCAAAGAAAAAATCGATTTAAGTTATATCGATGAACGCGGCCGTAAACATACACGCGTGCAAC
CTTTTGAAGGAATTTTGCCGCACCTTGAACGTCGCTATCGTGAAACTGAAAGTAACTATGTACGTGATGATTTAGCACAA
TATTTGTCTAATGCAGCTTGTGATGCATGTGGCGGTTCACGTCTCAATGAAATTTCACGTCATGTTCGTGTAAAAGACAA
AACCATTGCCGACATTACTCGCATGTCGATTGGAGATGCCGAAAGTTACTATCAAGGTATAAACCTTGAAGGTGCCAAAG
GTGAAATTGCAGATAAAATCTTTAAAGAGATTCGTGAGCGTTTACATTTCTTGGTGAGTGTTGGCCTGAACTATTTAAGT
CTGGCTCGCTCTGCCGAAACACTATCGGGTGGTGAAGCCCAGCGTATCCGTCTAGCTTCGCAAATTGGTGCAGGTTTGAT
GGGTGTCATGTACGTCCTTGATGAACCATCAATTGGTCTCCATCAACGTGATAATGACCGTTTATTACAAACGTTAATTC
GCTTACGTGATTTGGGCAATACGGTATTAGTCGTTGAACATGATGAAGATGCAATCCGTGCAGCTGACCATATTATTGAT
ATCGGCCCTGGTGCTGGTGTGCATGGTGGCGTTGTCATTGCTGAAGGTACGTATGATGAGCTGGCTAAACATGCCGACTC
GCTTACAGGTCAATATCTTTCAGGCAAACTCAAAATTGAAGTGCCAAAACAGCGAACTCAACCACCTAAACCTGAAGAAA
AAATTAAACTTTCAGGTGCAGCGGGTCATAACTTAAAAAATGTCGATTTAACCATCCCACTTGGCATTATGACTTGTGTC
ACGGGTGTTTCAGGTTCAGGTAAATCAACACTGATTAACCGTACGTTACTCCCATTGGCTGCAACACAGCTCAACGGTGC
AACGACCTTAACAGCTGAAAAGTTCGACTCGATTGATGGTCTACAACATCTGGACAAAGTCGTTGATATTGATCAAAGTC
CAATTGGACGTACTCCACGTTCTAACCCTGCAACGTATACAGGGTTATTTACGCCAATTCGTGAGTTATTTGCTCAAACA
CCAGAAGCGAAAGCTCGTGGTTATAGTGCGGGTCGTTTCTCGTTTAACGTAAAAGGCGGACGTTGCGAAGCGTGTGAAGG
CGACGGTATGATTAAAGTCGCAATGCACTTCTTACCAGACATGTATGTACCTTGCGATGCTTGTCATGGCAAACGCTATA
ACCGTGAAACACTTGAAGTCGGCTATAAAGGCAAAAACATTTCTGATGTTTTAGAAATGACGGTTGAAGATGCTGCTGAG
TTCTTTAGTGCTATTCCAGTTATTCACCGTCGTTTAGAAACCTTAACTCAGGTAGGTCTAGGCTATATTCGTTTAGGTCA
GGCGGCTACTACTTTATCTGGTGGTGAAGCACAGCGTGTCAAACTGGCTCGTGAGTTAGCGAAACGTGATACGGGTAAAA
CGCTTTATATCTTGGACGAACCAACAACAGGTTTGCATTTCCACGATATTGCCAAGTTACTCGATATTTTGCATGAGCTA
CGCAACAAGGGTAATACCATTGTGGTGATTGAACATAACCTTGATGTCATTAAAACAGCAGACTGGGTTGTCGACTTAGG
CCCTGAAGGTGGTTCGGGCGGTGGTATGATCATTGCCGAAGGTACACCTGAACAAGTAGCCGAGGTCGAGATTTCCCATA
CTGGTCGCTTCTTGAAACCGATGTTGAAACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D8FGA4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.25

100

0.563

  uvrA Streptococcus pneumoniae TIGR4

56.25

100

0.563

  uvrA Streptococcus pneumoniae D39

56.25

100

0.563