Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   VDS58_RS06715 Genome accession   NZ_CP141997
Coordinates   1271053..1272006 (+) Length   317 a.a.
NCBI ID   WP_041351863.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266053..1277006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS06690 (VDS58_06690) argF 1267883..1268842 (+) 960 WP_128747033.1 ornithine carbamoyltransferase -
  VDS58_RS06695 (VDS58_06695) yjzC 1268927..1269106 (+) 180 WP_003245356.1 YjzC family protein -
  VDS58_RS06700 (VDS58_06700) yjzD 1269153..1269338 (-) 186 WP_160245280.1 YjzD family protein -
  VDS58_RS06705 (VDS58_06705) - 1269589..1270323 (+) 735 WP_003245223.1 hypothetical protein -
  VDS58_RS06710 (VDS58_06710) - 1270405..1270962 (+) 558 WP_160245279.1 hypothetical protein -
  VDS58_RS06715 (VDS58_06715) med 1271053..1272006 (+) 954 WP_041351863.1 transcriptional regulator Med Regulator
  VDS58_RS06720 (VDS58_06720) comZ 1272021..1272212 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  VDS58_RS06725 (VDS58_06725) yjzB 1272242..1272478 (-) 237 WP_072173825.1 spore coat protein YjzB -
  VDS58_RS06730 (VDS58_06730) fabH 1272643..1273581 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  VDS58_RS06735 (VDS58_06735) fabF 1273604..1274845 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  VDS58_RS06740 (VDS58_06740) yjaZ 1274921..1275706 (+) 786 WP_160245278.1 DUF2268 domain-containing protein -
  VDS58_RS06745 (VDS58_06745) appD 1275898..1276884 (+) 987 WP_260665417.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35296.81 Da        Isoelectric Point: 4.6031

>NTDB_id=920705 VDS58_RS06715 WP_041351863.1 1271053..1272006(+) (med) [Bacillus subtilis strain PM0031]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIVNAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=920705 VDS58_RS06715 WP_041351863.1 1271053..1272006(+) (med) [Bacillus subtilis strain PM0031]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCGTAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACCTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTCAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTTGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAGGTAAACACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCTGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994