Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QQK52_RS05275 Genome accession   NZ_AP027963
Coordinates   1054417..1056078 (-) Length   553 a.a.
NCBI ID   WP_000880892.1    Uniprot ID   -
Organism   Escherichia coli strain VE-T9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049417..1061078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQK52_RS05240 (VET9_10080) - 1049865..1050269 (-) 405 WP_284345340.1 hypothetical protein -
  QQK52_RS05245 (VET9_10090) - 1050530..1051750 (-) 1221 WP_079836878.1 integrase domain-containing protein -
  QQK52_RS05255 (VET9_10100) smpB 1052495..1052977 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  QQK52_RS05260 (VET9_10110) ratA 1053148..1053585 (+) 438 WP_001491260.1 type II toxin-antitoxin system toxin RatA -
  QQK52_RS05265 (VET9_10120) yfjF 1053575..1053865 (+) 291 WP_001117843.1 RnfH family protein -
  QQK52_RS05270 (VET9_10130) bamE 1053927..1054268 (-) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  QQK52_RS05275 (VET9_10140) recN 1054417..1056078 (-) 1662 WP_000880892.1 DNA repair protein RecN Machinery gene
  QQK52_RS05280 (VET9_10150) nadK 1056164..1057042 (-) 879 WP_001059169.1 NAD(+) kinase -
  QQK52_RS05285 (VET9_10160) grpE 1057165..1057758 (+) 594 WP_001296310.1 nucleotide exchange factor GrpE -
  QQK52_RS05290 (VET9_10170) yfjD 1057812..1059098 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  QQK52_RS05295 (VET9_10180) ypjD 1059119..1059910 (-) 792 WP_001338897.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61379.33 Da        Isoelectric Point: 5.2547

>NTDB_id=92070 QQK52_RS05275 WP_000880892.1 1054417..1056078(-) (recN) [Escherichia coli strain VE-T9]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRNGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDHLDLDPNRLFELEQRLSKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=92070 QQK52_RS05275 WP_000880892.1 1054417..1056078(-) (recN) [Escherichia coli strain VE-T9]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCACAGCGGCATGACCGTAAT
AACCGGTGAAACCGGCGCGGGTAAATCTATTGCGATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGAGCTGAAGCCGACA
TGGTGCGTAATGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCTGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AGTTACTCACCAAACCCGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTGCTTCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGCGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCCGCCCGTGC
GGAACTACTGCAATACCAATTGAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACTACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTTCGCCACTACTGCGATCATCTGGATCTCG
ATCCCAACCGACTGTTTGAACTTGAACAGCGCCTCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTACCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAACCGCGCGCGCATTACACCAACAACGCCAGCAATATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCGCTCTCAATGCCGCATGGGCAGTTTACGATCGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGTGCCGATCGTATTGAATTTCGGGTAACCACCAACCCTGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCCCGCATCGCACTGGCAATCCAGGTCATTACCGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTAATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGGATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGCGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

38.336

100

0.383
  recN Bacillus subtilis subsp. subtilis str. 168

34.904

100

0.362