Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   VDS58_RS01995 Genome accession   NZ_CP141997
Coordinates   376337..376735 (-) Length   132 a.a.
NCBI ID   WP_014478800.1    Uniprot ID   A0A0D1L5A4
Organism   Bacillus subtilis strain PM0031     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 371337..381735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS01960 (VDS58_01960) - 372109..372306 (+) 198 WP_121509395.1 hypothetical protein -
  VDS58_RS01965 (VDS58_01965) yckC 372326..372781 (+) 456 WP_014478793.1 RDD family protein -
  VDS58_RS01970 (VDS58_01970) yckD 372863..373195 (+) 333 WP_014478794.1 YckD family protein -
  VDS58_RS01975 (VDS58_01975) - 373323..373745 (+) 423 WP_014478795.1 MarR family winged helix-turn-helix transcriptional regulator -
  VDS58_RS01980 (VDS58_01980) - 373733..374053 (+) 321 WP_014478796.1 DUF3147 family protein -
  VDS58_RS01985 (VDS58_01985) - 374072..374800 (+) 729 WP_021481826.1 AAA family ATPase -
  VDS58_RS01990 (VDS58_01990) bglC 374873..376300 (+) 1428 Protein_348 6-phospho-beta-glucosidase -
  VDS58_RS01995 (VDS58_01995) nin/comJ 376337..376735 (-) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  VDS58_RS02000 (VDS58_02000) nucA/comI 376762..377211 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  VDS58_RS02005 (VDS58_02005) tlpC 377379..379100 (-) 1722 Protein_351 methyl-accepting chemotaxis protein TlpC -
  VDS58_RS02010 (VDS58_02010) hxlB 379210..379767 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  VDS58_RS02015 (VDS58_02015) hxlA 379773..380405 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  VDS58_RS02020 (VDS58_02020) hxlR 380634..380996 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15006.98 Da        Isoelectric Point: 4.8991

>NTDB_id=920692 VDS58_RS01995 WP_014478800.1 376337..376735(-) (nin/comJ) [Bacillus subtilis strain PM0031]
MIKSWKPQELSISYHQFTVFQKDSTPPIMDWTDEAIEKGYTAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=920692 VDS58_RS01995 WP_014478800.1 376337..376735(-) (nin/comJ) [Bacillus subtilis strain PM0031]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TATAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATACTGCGGCAGACGGAGCCATTTCATTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAGAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L5A4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977