Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QQK52_RS05070 Genome accession   NZ_AP027963
Coordinates   1018506..1019021 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain VE-T9     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013506..1024021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQK52_RS05025 (VET9_09690) csrA 1014227..1014412 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  QQK52_RS05055 (VET9_09700) yqaB 1015736..1016302 (+) 567 WP_000273292.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QQK52_RS05060 (VET9_09710) yqaA 1016299..1016727 (+) 429 WP_001287454.1 YqaA family protein -
  QQK52_RS05065 (VET9_09720) gshA 1016800..1018356 (+) 1557 WP_032218630.1 glutamate--cysteine ligase -
  QQK52_RS05070 (VET9_09730) luxS 1018506..1019021 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QQK52_RS05075 (VET9_09740) emrB 1019085..1020623 (-) 1539 WP_001817020.1 multidrug efflux MFS transporter permease subunit EmrB -
  QQK52_RS05080 (VET9_09750) emrA 1020640..1021812 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QQK52_RS05085 (VET9_09760) emrR 1021939..1022469 (-) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QQK52_RS05090 (VET9_09770) ygaH 1022560..1022895 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  QQK52_RS05095 (VET9_09780) ygaZ 1022885..1023622 (-) 738 WP_000445661.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=92069 QQK52_RS05070 WP_001130211.1 1018506..1019021(+) (luxS) [Escherichia coli strain VE-T9]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=92069 QQK52_RS05070 WP_001130211.1 1018506..1019021(+) (luxS) [Escherichia coli strain VE-T9]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAGCTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment