Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU78_RS13275 Genome accession   NZ_AP025490
Coordinates   3029288..3030295 (+) Length   335 a.a.
NCBI ID   WP_137375071.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3024288..3035295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS13255 metJ 3024302..3024622 (+) 321 WP_004415993.1 met regulon transcriptional regulator MetJ -
  OCU78_RS13260 - 3024787..3026097 (-) 1311 WP_137375074.1 malic enzyme-like NAD(P)-binding protein -
  OCU78_RS13265 rpmE 3026309..3026524 (-) 216 WP_137375073.1 50S ribosomal protein L31 -
  OCU78_RS13270 priA 3026869..3029070 (+) 2202 WP_137375072.1 primosomal protein N' -
  OCU78_RS13275 cytR 3029288..3030295 (+) 1008 WP_137375071.1 DNA-binding transcriptional regulator CytR Regulator
  OCU78_RS13280 ftsN 3030407..3030946 (+) 540 WP_137375070.1 cell division protein FtsN -
  OCU78_RS13285 hslV 3031222..3031770 (+) 549 WP_137375069.1 ATP-dependent protease subunit HslV -
  OCU78_RS13290 hslU 3031935..3033272 (+) 1338 WP_137375068.1 HslU--HslV peptidase ATPase subunit -
  OCU78_RS13295 - 3033462..3034379 (+) 918 WP_137375067.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCU78_RS13300 rraA 3034452..3035027 (+) 576 WP_137375066.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36651.05 Da        Isoelectric Point: 6.3471

>NTDB_id=92069 OCU78_RS13275 WP_137375071.1 3029288..3030295(+) (cytR) [Vibrio gallaecicus strain CECT 7244]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVENAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFTEIIRG
IEDAAVEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDLSKPEQKNLPPMVMACEFAPDLELPTVHIDN
LTSAFEAVNYLTQLGHKRIGQISGPTSATLCQFRQQGYQQALRRAGITMNPAYGTVGDFTFEAGAQSIRQLLALPEPPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSVVGFDDIKFAQYCDPPLTTISQPRYEIGRQAMLMMLDVLKGNDVQAGSRLLE
TELIVRGSTAPPRIQ

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=92069 OCU78_RS13275 WP_137375071.1 3029288..3030295(+) (cytR) [Vibrio gallaecicus strain CECT 7244]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTTTCTACAGCGACAGTATCAAGAGCGCTTATGAACCCGGAAAA
AGTATCATCTTCAACTCGTAAACGCGTTGAAAATGCCGTACTTGAAGCTGGATACTCACCTAACTCGTTAGCTAGAAACT
TACGTCGCAACGAATCTAAAACCATAGTAACTATTGTCCCAGACATCTGTGACCCTTACTTTACGGAAATTATCCGTGGG
ATTGAAGATGCTGCGGTTGAACACGGATACCTTGTGTTACTTGGCGATAGTGGACAACAAAAGAAGCGTGAGAGCTCTTT
TGTAAATTTAGTGTTCACCAAACAAGCTGATGGCATGTTGTTACTCGGTACAGATCATCCATTTGACTTAAGTAAACCCG
AGCAAAAGAATTTACCTCCCATGGTAATGGCTTGTGAGTTTGCCCCAGATCTTGAGCTTCCGACTGTCCATATAGACAAC
TTAACGTCTGCATTTGAAGCCGTGAACTATCTCACTCAACTTGGTCATAAGCGTATAGGGCAAATTTCAGGTCCAACGTC
TGCGACACTCTGTCAATTTCGTCAGCAAGGTTACCAGCAAGCACTACGCCGAGCAGGTATCACAATGAACCCTGCCTATG
GCACGGTTGGCGATTTTACTTTTGAAGCTGGCGCGCAATCGATTCGCCAACTGCTCGCACTGCCAGAACCTCCAACTGCT
ATCTTCTGTCACAACGATGCTATGGCTATCGGTGCGATTCAAGAAGCGAAGAAGTTAGGTCTACGCGTTCCACAAGACCT
TTCAGTTGTAGGCTTCGATGACATTAAATTCGCACAATACTGCGATCCACCGCTCACCACTATTTCACAACCTCGCTACG
AGATCGGTCGTCAGGCGATGCTAATGATGCTGGACGTATTGAAAGGCAATGATGTTCAAGCTGGTTCCCGCTTGCTTGAA
ACAGAGTTGATCGTACGAGGAAGTACAGCTCCACCACGCATTCAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

90.06

99.104

0.893
  cytR Vibrio parahaemolyticus RIMD 2210633

87.988

99.403

0.875

Multiple sequence alignment