Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   VOA82_RS08015 Genome accession   NZ_CP141951
Coordinates   1711196..1711552 (+) Length   118 a.a.
NCBI ID   WP_370429667.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain ZJXS2022     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1710149..1711072 1711196..1711552 flank 124


Gene organization within MGE regions


Location: 1710149..1711552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOA82_RS08010 (VOA82_07985) - 1710149..1711123 (-) 975 WP_080513256.1 IS30-like element ISApl1 family transposase -
  VOA82_RS08015 (VOA82_07990) comEA/comE1 1711196..1711552 (+) 357 WP_370429667.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12817.70 Da        Isoelectric Point: 10.2030

>NTDB_id=920631 VOA82_RS08015 WP_370429667.1 1711196..1711552(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain ZJXS2022]
MVNSAKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQA
IVDYRTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 357 bp        

>NTDB_id=920631 VOA82_RS08015 WP_370429667.1 1711196..1711552(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain ZJXS2022]
ATTGTAAATTCAGCGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAA
GCCTAATAATCCGCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAA
ATCAAGTGAATATCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCG
ATTGTCGATTACCGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGAC
ACTAGAGAAAAATCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.895

96.61

0.559
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

88.136

0.415