Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCU78_RS11960 Genome accession   NZ_AP025490
Coordinates   2765897..2766880 (-) Length   327 a.a.
NCBI ID   WP_137373356.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2760897..2771880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS11945 recA 2761400..2762437 (-) 1038 WP_137373359.1 recombinase RecA Machinery gene
  OCU78_RS11950 pncC 2762617..2763108 (-) 492 WP_137373358.1 nicotinamide-nucleotide amidase -
  OCU78_RS11955 mutS 2763243..2765804 (+) 2562 WP_137373357.1 DNA mismatch repair protein MutS -
  OCU78_RS11960 rpoS 2765897..2766880 (-) 984 WP_137373356.1 RNA polymerase sigma factor RpoS Regulator
  OCU78_RS11965 - 2766976..2767914 (-) 939 WP_137373355.1 peptidoglycan DD-metalloendopeptidase family protein -
  OCU78_RS11970 - 2767951..2768577 (-) 627 WP_137373354.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCU78_RS11975 surE 2768578..2769321 (-) 744 WP_137373353.1 5'/3'-nucleotidase SurE -
  OCU78_RS11980 truD 2769360..2770406 (-) 1047 WP_137373352.1 tRNA pseudouridine(13) synthase TruD -
  OCU78_RS11985 ispF 2770429..2770908 (-) 480 WP_137373615.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCU78_RS11990 ispD 2770911..2771612 (-) 702 WP_137373351.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37382.54 Da        Isoelectric Point: 5.0515

>NTDB_id=92062 OCU78_RS11960 WP_137373356.1 2765897..2766880(-) (rpoS) [Vibrio gallaecicus strain CECT 7244]
MSISSAVVKEEFTLDQAAMESECNEQANQPKSKKTEAKEKEVEVSAKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELAQKLDHEPTAEDIASKLDKPVDDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDP
EVSTQDNDIKNSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLSMEN
LFNVEND

Nucleotide


Download         Length: 984 bp        

>NTDB_id=92062 OCU78_RS11960 WP_137373356.1 2765897..2766880(-) (rpoS) [Vibrio gallaecicus strain CECT 7244]
ATGAGTATAAGCAGTGCAGTAGTTAAAGAAGAATTCACACTTGATCAAGCAGCCATGGAATCGGAGTGCAATGAACAAGC
CAATCAACCCAAAAGTAAAAAAACTGAAGCTAAAGAAAAAGAAGTTGAAGTTAGCGCTAAAAATTTAGACGCCACACAGC
TTTATTTAGGCGAAATCGGTTTCTCACCACTCTTAACTGCGGAAGAAGAAGTGCTTTATGCACGACGAGCTCTACGCGGA
GATGAAGCAGCACGTAAACGTATGATTGAAAGTAATCTGCGACTTGTTGTAAAAATCTCTCGCCGTTATAGCAACCGTGG
TCTTGCACTACTAGATCTTATTGAAGAAGGCAATCTAGGCTTAATTCGTGCCGTCGAGAAGTTTGATCCCGAACGAGGTT
TCCGTTTTTCTACTTACGCCACATGGTGGATCCGTCAAACCATTGAACGAGCCCTAATGAATCAGACTCGTACAATTCGC
TTGCCTATTCATGTCGTCAAAGAGCTGAATATTTATTTACGAACAGCTCGAGAGCTAGCTCAAAAGCTTGATCATGAACC
AACCGCTGAGGATATTGCTTCTAAACTGGATAAGCCAGTTGATGATGTTAGCAAGATGCTTCGTCTAAATGAGCGAGTAA
GCTCAGTAGACACACCTATTGGTGGCGATGGTGAAAAAGCTCTACTTGATATTATCCCTGATATTAATAATTCAGATCCT
GAAGTTTCGACACAAGATAACGACATTAAAAACTCACTGATTCACTGGTTAGATGAGCTGAACCCAAAACAAAAAGAAGT
CCTCGCAAGGCGTTTTGGTTTACTTGGCTACGAGCCATCGACTCTAGAAGAAGTAGGTCGTGAGATCAGTTTGACACGTG
AACGTGTTCGCCAGATCCAAGTTGAAGGGCTGCGTCGTTTAAGAGAGATTTTGATTAAACAAGGTCTTAGTATGGAAAAT
CTATTCAATGTTGAGAATGATTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 region 2 (Sigma70_r2)

(88-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

80

100

0.82

Multiple sequence alignment