Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   VPN06_RS10560 Genome accession   NZ_CP141950
Coordinates   2270986..2271558 (-) Length   190 a.a.
NCBI ID   WP_324682415.1    Uniprot ID   -
Organism   Bibersteinia trehalosi strain M01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2265986..2276558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPN06_RS10530 - 2266298..2266462 (-) 165 WP_015433237.1 Trm112 family protein -
  VPN06_RS10535 lpxK 2266455..2267444 (-) 990 WP_324682414.1 tetraacyldisaccharide 4'-kinase -
  VPN06_RS10540 clpX 2267614..2268867 (-) 1254 WP_025289758.1 ATP-dependent protease ATP-binding subunit ClpX -
  VPN06_RS10545 clpP 2268867..2269457 (-) 591 WP_025266793.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  VPN06_RS10550 - 2269565..2269963 (+) 399 WP_015433242.1 SufE family protein -
  VPN06_RS10555 - 2269945..2270931 (-) 987 WP_015433243.1 AEC family transporter -
  VPN06_RS10560 pilF 2270986..2271558 (-) 573 WP_324682415.1 tetratricopeptide repeat protein Machinery gene
  VPN06_RS10565 - 2271657..2272220 (-) 564 WP_324682416.1 anthranilate synthase component II -
  VPN06_RS10570 rmuC 2272225..2273853 (-) 1629 WP_324682417.1 DNA recombination protein RmuC -
  VPN06_RS10575 ung 2273922..2274584 (-) 663 WP_015433247.1 uracil-DNA glycosylase -
  VPN06_RS10580 grcA 2274701..2275084 (+) 384 WP_015433248.1 autonomous glycyl radical cofactor GrcA -
  VPN06_RS10585 rpsO 2275212..2275481 (-) 270 WP_015433249.1 30S ribosomal protein S15 -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21441.57 Da        Isoelectric Point: 7.3201

>NTDB_id=920612 VPN06_RS10560 WP_324682415.1 2270986..2271558(-) (pilF) [Bibersteinia trehalosi strain M01]
MFFAKLPQYLSACLLIFLFSGCVNLQTSADFDRDEALIARASLALAYLEQQDFSKAKENIEKALSHNSQHYLAHLVAAYY
YQQLSDVQHAEQSYQAAIRLSHQIKQNSPLPEVLNNYGTFLCQQGKFVQAYTQFEQALTGEKAYLRQGDTLENMVLCAKQ
ANQLEKMAQALARLVLLDAERAAKLAKIVK

Nucleotide


Download         Length: 573 bp        

>NTDB_id=920612 VPN06_RS10560 WP_324682415.1 2270986..2271558(-) (pilF) [Bibersteinia trehalosi strain M01]
ATGTTTTTTGCAAAATTGCCTCAATATTTAAGCGCTTGCTTGCTGATTTTTTTATTCAGCGGTTGCGTAAACCTACAAAC
GTCAGCTGATTTTGATAGAGATGAAGCACTAATAGCGCGAGCAAGCCTTGCTCTTGCTTATCTTGAACAGCAGGATTTCT
CAAAAGCGAAAGAGAATATAGAGAAAGCCTTGAGCCATAACAGCCAACATTATTTGGCGCACCTTGTCGCCGCTTATTAC
TATCAGCAACTTAGCGATGTTCAGCATGCAGAGCAAAGTTATCAGGCAGCGATTCGTTTAAGTCATCAGATTAAGCAAAA
TTCACCATTGCCTGAGGTGCTCAATAACTATGGGACATTTTTATGCCAACAAGGTAAATTTGTTCAAGCTTATACGCAAT
TTGAGCAAGCACTTACAGGAGAAAAAGCTTATCTACGCCAAGGCGATACATTAGAAAATATGGTATTGTGTGCCAAGCAG
GCTAACCAGTTAGAGAAAATGGCTCAGGCACTAGCGCGCTTGGTGCTATTAGATGCAGAACGGGCAGCAAAACTTGCAAA
AATTGTCAAATAG

Domains

Predicted by InterproScan.

Tetratricopeptide repeat-like domain (TPR_21)

(38-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

53.763

97.895

0.526
  pilF/pilF2 Haemophilus influenzae Rd KW20

43.182

92.632

0.4