Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU78_RS11835 Genome accession   NZ_AP025490
Coordinates   2744259..2744777 (-) Length   172 a.a.
NCBI ID   WP_137373368.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2739259..2749777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS11810 rimM 2739283..2739837 (-) 555 WP_137373372.1 ribosome maturation factor RimM -
  OCU78_RS11815 rpsP 2739862..2740110 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  OCU78_RS11820 ffh 2740322..2741713 (-) 1392 WP_137373371.1 signal recognition particle protein -
  OCU78_RS11825 - 2741918..2742712 (+) 795 WP_137373370.1 inner membrane protein YpjD -
  OCU78_RS11830 - 2742839..2744107 (+) 1269 WP_137373369.1 HlyC/CorC family transporter -
  OCU78_RS11835 luxS 2744259..2744777 (-) 519 WP_137373368.1 S-ribosylhomocysteine lyase Regulator
  OCU78_RS11840 - 2744800..2745426 (-) 627 WP_137373367.1 hypothetical protein -
  OCU78_RS11845 gshA 2745455..2747023 (-) 1569 WP_137373616.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18918.73 Da        Isoelectric Point: 4.7055

>NTDB_id=92059 OCU78_RS11835 WP_137373368.1 2744259..2744777(-) (luxS) [Vibrio gallaecicus strain CECT 7244]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGTPTEQLVADSWLAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKDIAKAIISSGIAVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92059 OCU78_RS11835 WP_137373368.1 2744259..2744777(-) (luxS) [Vibrio gallaecicus strain CECT 7244]
ATGCCTTTATTAGATAGTTTTACTGTTGATCACACGCGAATGAATGCACCAGCGGTTCGTGTCGCTAAAACAATGCAAAC
CCCTAAAGGGGATACCATCACAGTATTTGATTTACGTTTTACTGCTCCGAATAAAGATATCTTATCTGAAAAAGGTATCC
ATACTTTAGAGCACTTATATGCTGGTTTTATGCGAGCGCACTTAAACGGTGCAAATGTAGAAATTATTGATATCTCACCA
ATGGGGTGTCGTACCGGTTTCTATATGAGCTTGATTGGAACTCCAACCGAGCAACTGGTAGCTGACTCTTGGTTAGCGGC
AATGGAAGATGTTCTGAAAGTTGAAAGCCAAAACAAGATCCCAGAGCTGAATGAATATCAGTGTGGTACCGCAGCGATGC
ATTCTTTAGATGAAGCAAAAGATATAGCTAAAGCAATTATTTCTTCAGGTATTGCAGTGAATAAAAATGATGAACTGGCT
TTGCCTGAATCAATGCTGCAAGAGTTAAAAATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment