Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   VN992_RS07530 Genome accession   NZ_CP141949
Coordinates   1627957..1628301 (+) Length   114 a.a.
NCBI ID   WP_005599904.1    Uniprot ID   A3N254
Organism   Actinobacillus pleuropneumoniae strain AH2022     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1622957..1633301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN992_RS07505 (VN992_07495) rpsL 1623090..1623464 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  VN992_RS07510 (VN992_07500) rfaC 1623586..1624545 (-) 960 WP_005602025.1 lipopolysaccharide heptosyltransferase RfaC -
  VN992_RS07515 (VN992_07505) waaF 1624620..1625657 (-) 1038 WP_005619838.1 lipopolysaccharide heptosyltransferase II -
  VN992_RS07520 (VN992_07510) - 1625739..1626143 (-) 405 WP_005599908.1 MliC family protein -
  VN992_RS07525 (VN992_07515) - 1626265..1627656 (-) 1392 WP_370427050.1 LysM-like peptidoglycan-binding domain-containing protein -
  VN992_RS07530 (VN992_07520) comEA/comE1 1627957..1628301 (+) 345 WP_005599904.1 ComEA family DNA-binding protein Machinery gene
  VN992_RS07535 (VN992_07525) asd 1628452..1629342 (+) 891 WP_005602033.1 archaetidylserine decarboxylase -
  VN992_RS07540 (VN992_07530) hsdR 1629459..1631822 (+) 2364 WP_039709276.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12446.30 Da        Isoelectric Point: 10.2030

>NTDB_id=920580 VN992_RS07530 WP_005599904.1 1627957..1628301(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain AH2022]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=920580 VN992_RS07530 WP_005599904.1 1627957..1628301(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain AH2022]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N254

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.588
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

91.228

0.43