Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCU78_RS11725 Genome accession   NZ_AP025490
Coordinates   2719554..2720162 (+) Length   202 a.a.
NCBI ID   WP_137373389.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2714554..2725162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS11705 - 2714760..2715677 (-) 918 WP_137373393.1 ABC transporter ATP-binding protein -
  OCU78_RS11710 - 2715976..2717646 (-) 1671 WP_137373392.1 SulP family inorganic anion transporter -
  OCU78_RS11715 can 2717891..2718550 (+) 660 WP_137373391.1 carbonate dehydratase -
  OCU78_RS11720 hpt 2718684..2719214 (-) 531 WP_137373390.1 hypoxanthine phosphoribosyltransferase -
  OCU78_RS11725 opaR 2719554..2720162 (+) 609 WP_137373389.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCU78_RS11730 lpdA 2720261..2721688 (-) 1428 WP_137373388.1 dihydrolipoyl dehydrogenase -
  OCU78_RS11735 aceF 2721930..2723819 (-) 1890 WP_137373387.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23317.62 Da        Isoelectric Point: 6.2262

>NTDB_id=92055 OCU78_RS11725 WP_137373389.1 2719554..2720162(+) (opaR) [Vibrio gallaecicus strain CECT 7244]
MDSIAKRPRTRLSPLKRKLQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLT
DNIDLDLHAKDNLQNIANQMVTLVADDCQWLKVWFEWSASTRDEVWPLFVTTNRTNQALLKNMFTKAIEREEVCDKHSPS
HLVNLFHGICYSLFIQANRAQSQEELDTLTDSYLNMLCIYKS

Nucleotide


Download         Length: 609 bp        

>NTDB_id=92055 OCU78_RS11725 WP_137373389.1 2719554..2720162(+) (opaR) [Vibrio gallaecicus strain CECT 7244]
ATGGACTCAATAGCTAAGAGACCTAGAACTAGGCTTTCCCCTTTAAAAAGAAAACTCCAGTTAATGGAGATCGCACTTGA
AGTATTTGCTCGCCGTGGTATTGGTCGTGGTGGACACGCAGATATTGCTGAAATTGCTCAAGTGTCTGTTGCAACTGTCT
TTAATTACTTCCCAACTCGTGAAGATCTTGTTGATGAAGTTTTGAACCATGTTGTACGTCAATTTTCTAATTTCTTAACA
GATAACATTGACTTAGACCTGCATGCAAAAGATAACCTGCAAAACATTGCTAATCAGATGGTGACATTAGTCGCTGATGA
TTGCCAATGGCTTAAAGTATGGTTTGAATGGAGTGCATCGACTCGCGATGAAGTTTGGCCGCTGTTTGTAACAACAAACC
GTACGAACCAAGCATTACTGAAGAATATGTTTACTAAAGCTATCGAGCGTGAAGAAGTGTGTGATAAACACAGCCCTTCT
CACTTAGTGAATTTGTTCCATGGTATTTGTTACTCACTGTTCATTCAGGCAAATCGTGCTCAATCACAAGAAGAACTAGA
TACGCTGACTGATAGCTACCTAAATATGCTTTGTATCTACAAGTCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.5

99.01

0.807
  hapR Vibrio cholerae C6706

75.5

99.01

0.748
  hapR Vibrio cholerae strain A1552

75.5

99.01

0.748

Multiple sequence alignment