Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   AB3N37_RS09330 Genome accession   NZ_CP162185
Coordinates   1936240..1936896 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain STK78-E     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1931240..1941896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N37_RS09295 (AB3N37_09285) dcyD 1932119..1933105 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  AB3N37_RS09300 (AB3N37_09290) tcyL 1933120..1933788 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  AB3N37_RS09305 (AB3N37_09295) tcyN 1933785..1934537 (+) 753 WP_341452441.1 L-cystine ABC transporter ATP-binding protein TcyN -
  AB3N37_RS09310 (AB3N37_09300) sdiA 1934767..1935489 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  AB3N37_RS09315 (AB3N37_09305) yecF 1935557..1935781 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  AB3N37_RS09320 (AB3N37_09310) yecU 1935768..1935944 (-) 177 WP_000590344.1 protein YecU -
  AB3N37_RS09325 (AB3N37_09315) - 1935982..1936098 (-) 117 WP_001302039.1 hypothetical protein -
  AB3N37_RS09330 (AB3N37_09320) letA 1936240..1936896 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  AB3N37_RS09335 (AB3N37_09325) uvrC 1936893..1938725 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  AB3N37_RS09340 (AB3N37_09330) pgsA 1938782..1939330 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3N37_RS09360 (AB3N37_09350) - 1940026..1940766 (-) 741 WP_032187455.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=920498 AB3N37_RS09330 WP_000611335.1 1936240..1936896(+) (letA) [Escherichia coli strain STK78-E]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=920498 AB3N37_RS09330 WP_000611335.1 1936240..1936896(+) (letA) [Escherichia coli strain STK78-E]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486