Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB3N37_RS05600 Genome accession   NZ_CP162185
Coordinates   1146436..1148097 (-) Length   553 a.a.
NCBI ID   WP_095139223.1    Uniprot ID   -
Organism   Escherichia coli strain STK78-E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1141436..1153097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N37_RS05580 (AB3N37_05580) smpB 1144514..1144996 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  AB3N37_RS05585 (AB3N37_05585) ratA 1145167..1145604 (+) 438 WP_001300750.1 type II toxin-antitoxin system toxin RatA -
  AB3N37_RS05590 (AB3N37_05590) yfjF 1145594..1145884 (+) 291 WP_001117838.1 RnfH family protein -
  AB3N37_RS05595 (AB3N37_05595) bamE 1145946..1146287 (-) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  AB3N37_RS05600 (AB3N37_05600) recN 1146436..1148097 (-) 1662 WP_095139223.1 DNA repair protein RecN Machinery gene
  AB3N37_RS05605 (AB3N37_05605) nadK 1148183..1149061 (-) 879 WP_001059169.1 NAD(+) kinase -
  AB3N37_RS05610 (AB3N37_05610) grpE 1149184..1149777 (+) 594 WP_001296310.1 nucleotide exchange factor GrpE -
  AB3N37_RS05615 (AB3N37_05615) yfjD 1149832..1151118 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  AB3N37_RS05620 (AB3N37_05620) ypjD 1151139..1151930 (-) 792 WP_001338897.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61386.41 Da        Isoelectric Point: 5.3433

>NTDB_id=920485 AB3N37_RS05600 WP_095139223.1 1146436..1148097(-) (recN) [Escherichia coli strain STK78-E]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQSIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=920485 AB3N37_RS05600 WP_095139223.1 1146436..1148097(-) (recN) [Escherichia coli strain STK78-E]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAAT
AACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACA
TGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCTCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTGATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCTGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AATTACTCACCAAACCTGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTACTGCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGTGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCCGCCCGTGC
GGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTGCGCCACTACTGCGATCGTCTGGATCTCG
ATCCCAACCGACTATTTGAACTTGAACAGCGCATCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTAGACGATCAGGCCGACTCACAAGAAACGCTTGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAATCGCGCGCGCATTACACCAACAACGCCAGCAATATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCGCTCTCAATGCCGCATGGGCAGTTTACGATCGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGTGCCGATCGTATTGAGTTTCGGGTAACCACCAACCCAGGTCAGCCAATGCAGTCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCCCGCATCGCACTGGCAATCCAGGTCATCACGGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGTGAAGTCACACGTAATACACTGGCGAATGCGAAAGAACTGCTTGCAGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.794

100

0.378
  recN Bacillus subtilis subsp. subtilis str. 168

34.904

100

0.362