Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU78_RS04565 Genome accession   NZ_AP025490
Coordinates   1020825..1022222 (+) Length   465 a.a.
NCBI ID   WP_137372380.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1015825..1027222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS04545 rsxB 1016543..1017136 (-) 594 WP_137372377.1 electron transport complex subunit RsxB -
  OCU78_RS04550 rsxA 1017139..1017717 (-) 579 WP_137372378.1 electron transport complex subunit RsxA -
  OCU78_RS04560 uvrB 1018575..1020605 (+) 2031 WP_137372379.1 excinuclease ABC subunit UvrB -
  OCU78_RS04565 luxO 1020825..1022222 (+) 1398 WP_137372380.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU78_RS04570 luxU 1022238..1022576 (+) 339 WP_137372381.1 quorum-sensing phosphorelay protein LuxU -
  OCU78_RS04575 - 1022673..1023557 (-) 885 WP_137372382.1 YvcK family protein -
  OCU78_RS04580 moaA 1023891..1024880 (+) 990 WP_137372383.1 GTP 3',8-cyclase MoaA -
  OCU78_RS04585 moaB 1024971..1025483 (+) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  OCU78_RS04590 moaC 1025496..1025975 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU78_RS04595 moaD 1025972..1026217 (+) 246 WP_137372384.1 molybdopterin synthase sulfur carrier subunit -
  OCU78_RS04600 moaE 1026220..1026693 (+) 474 WP_137372385.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 51990.47 Da        Isoelectric Point: 5.9764

>NTDB_id=92047 OCU78_RS04565 WP_137372380.1 1020825..1022222(+) (luxO) [Vibrio gallaecicus strain CECT 7244]
MQSNSLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLTHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGSQNYQGFIGSSQTMQQVYRT
IDSAATSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSNEEGKAFVRFSPEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEIAINMLPPPLNQPIENSI
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQAWNAKEQTQ

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=92047 OCU78_RS04565 WP_137372380.1 1020825..1022222(+) (luxO) [Vibrio gallaecicus strain CECT 7244]
ATGCAATCAAACTCTTTAGATAACAAATCGAAGTATTTGTTAATGGTCGAGGATACGGCTTCTGTTGCCGCGTTATATCG
CTCTTACCTGACCCCTCTTGAAATCGATATCAATATTGTAGGTACAGGTCGAGATGCTATCGAAAGCCTTACTCATCGGA
TTCCAGATCTCATTTTACTGGACCTTCGCCTGCCAGATATGACTGGTATGGATGTACTTTTTGCTGTGAAACAAAAGTAC
CCTGAAGTGCCGGTTATCTTTATGACTGCTCACGGGTCAATCGATACTGCGGTTGAAGCGATGCGCCATGGCTCGCAAGA
CTTTTTAATAAAACCTTGTGAGGCAGACCGCCTACGTATCACGGTCAATAATGCCATTCGTAAAGCGACAAAATTAAAAA
ATAGTGCAGAACACCCAGGAAGTCAGAACTACCAGGGTTTTATTGGCAGTAGCCAAACGATGCAGCAGGTGTATAGAACC
ATAGACTCAGCAGCCACTAGTAAAGCAAGTATCTTTATCACAGGAGAAAGTGGTACAGGTAAAGAGGTATGTGCTGAAGC
TATTCATGCAGCCAGTAAGCGAGGTGATAAGCCTTTTATTGCAATTAACTGTGCGGCAATCCCTAAAGATCTCATTGAAA
GTGAACTGTTTGGTCACGTCAAAGGTGCATTTACTGGGGCAGCAACCGATAGGCAAGGTGCTGCTGAATTAGCTGATGGA
GGCACACTATTTCTAGATGAACTCTGTGAAATGGATCTTGAGCTTCAAACTAAGCTTTTACGGTTTATACAAACAGGAAC
CTTTCAAAAAGTAGGTTCTTCAAAAATGAAGAGCGTTGATGTTCGATTTGTATGTGCAACGAATAGAGACCCGTGGAAAG
AAGTTCAAGAAGGGCGCTTTAGAGAAGATTTATATTACCGACTTTATGTGATTCCTTTGCATCTACCGCCCTTGAGAGAA
AGAGGGGAGGATGTTATTGAGATTGCCTATTCTTTATTGGGTTATATGTCTAATGAAGAGGGTAAAGCGTTCGTACGTTT
CTCACCTGAAGTATTAGACCGCTTTAATCAGTATGAGTGGCCTGGAAATGTTCGCCAACTTCAAAATGTACTTCGAAATG
TTGTGGTGTTGAATAACGGTAAAGAGATTGCAATTAATATGCTTCCACCTCCGCTGAATCAACCTATTGAAAACAGTATC
CGCTTGAAAGAAAAGCAGAATGAAGACATTACGGTAAAAGATATTTTTCCATTATGGATAACTGAAAAGACTGCAATTGA
ACAAGCAATTAAAGCGTGTGATGGCAATATACCAAGAGCGGCTGGCTTTTTGGATGTTAGCCCTTCAACTATTTATCGAA
AGCTACAAGCTTGGAATGCGAAAGAACAAACACAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.268

96.344

0.822
  pilR Pseudomonas aeruginosa PAK

38.393

96.344

0.37

Multiple sequence alignment