Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   VKS18_RS16770 Genome accession   NZ_CP141895
Coordinates   3394821..3395510 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain B004     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3389821..3400510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKS18_RS16735 (VKS18_06660) - 3390018..3390500 (-) 483 WP_032876168.1 flagellar protein FlgN -
  VKS18_RS16740 (VKS18_06665) flgM 3390515..3390781 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  VKS18_RS16745 (VKS18_06670) - 3390851..3391270 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  VKS18_RS16750 (VKS18_06675) comFC 3391344..3392033 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  VKS18_RS16755 (VKS18_06680) - 3392039..3392323 (-) 285 WP_003151389.1 competence protein ComFB -
  VKS18_RS16760 (VKS18_06685) comFA 3392381..3393766 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  VKS18_RS16765 (VKS18_06690) - 3393875..3394723 (-) 849 WP_032876160.1 DegV family protein -
  VKS18_RS16770 (VKS18_06695) degU 3394821..3395510 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VKS18_RS16775 (VKS18_06700) degS 3395587..3396750 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  VKS18_RS16780 (VKS18_06705) - 3396973..3397620 (+) 648 WP_007614107.1 YigZ family protein -
  VKS18_RS16785 (VKS18_06710) - 3397625..3398806 (+) 1182 WP_032876157.1 LCP family protein -
  VKS18_RS16790 (VKS18_06715) - 3398905..3399981 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=920394 VKS18_RS16770 WP_003219701.1 3394821..3395510(-) (degU) [Bacillus velezensis strain B004]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=920394 VKS18_RS16770 WP_003219701.1 3394821..3395510(-) (degU) [Bacillus velezensis strain B004]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1