Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   VKS18_RS16750 Genome accession   NZ_CP141895
Coordinates   3391344..3392033 (-) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain B004     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3386344..3397033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKS18_RS16715 (VKS18_06640) fliW 3386435..3386866 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  VKS18_RS16720 (VKS18_06645) - 3386896..3387465 (-) 570 WP_007407476.1 DUF6470 family protein -
  VKS18_RS16725 (VKS18_06650) flgL 3387556..3388473 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  VKS18_RS16730 (VKS18_06655) flgK 3388485..3390002 (-) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  VKS18_RS16735 (VKS18_06660) - 3390018..3390500 (-) 483 WP_032876168.1 flagellar protein FlgN -
  VKS18_RS16740 (VKS18_06665) flgM 3390515..3390781 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  VKS18_RS16745 (VKS18_06670) - 3390851..3391270 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  VKS18_RS16750 (VKS18_06675) comFC 3391344..3392033 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  VKS18_RS16755 (VKS18_06680) - 3392039..3392323 (-) 285 WP_003151389.1 competence protein ComFB -
  VKS18_RS16760 (VKS18_06685) comFA 3392381..3393766 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  VKS18_RS16765 (VKS18_06690) - 3393875..3394723 (-) 849 WP_032876160.1 DegV family protein -
  VKS18_RS16770 (VKS18_06695) degU 3394821..3395510 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VKS18_RS16775 (VKS18_06700) degS 3395587..3396750 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=920392 VKS18_RS16750 WP_196770545.1 3391344..3392033(-) (comFC) [Bacillus velezensis strain B004]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=920392 VKS18_RS16750 WP_196770545.1 3391344..3392033(-) (comFC) [Bacillus velezensis strain B004]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594