Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   AB3N50_RS13890 Genome accession   NZ_CP162160
Coordinates   2784072..2784728 (-) Length   218 a.a.
NCBI ID   WP_169772894.1    Uniprot ID   -
Organism   Escherichia coli strain STS73-1-E     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2779072..2789728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N50_RS13860 (AB3N50_13865) yecA 2780323..2780988 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  AB3N50_RS13880 (AB3N50_13885) pgsA 2781638..2782186 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3N50_RS13885 (AB3N50_13890) uvrC 2782243..2784075 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  AB3N50_RS13890 (AB3N50_13895) letA 2784072..2784728 (-) 657 WP_169772894.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  AB3N50_RS13895 (AB3N50_13900) - 2784870..2784986 (+) 117 WP_001302039.1 hypothetical protein -
  AB3N50_RS13900 (AB3N50_13905) yecU 2785024..2785200 (+) 177 WP_000590344.1 protein YecU -
  AB3N50_RS13905 (AB3N50_13910) yecF 2785187..2785411 (+) 225 WP_000106473.1 DUF2594 family protein YecF -
  AB3N50_RS13910 (AB3N50_13915) - 2785479..2785559 (-) 81 Protein_2720 transcriptional regulator SdiA -
  AB3N50_RS13915 (AB3N50_13920) - 2785615..2786312 (+) 698 WP_103215986.1 IS1-like element IS1A family transposase -
  AB3N50_RS13920 (AB3N50_13925) sdiA 2786328..2786978 (-) 651 Protein_2722 transcriptional regulator SdiA -
  AB3N50_RS13925 (AB3N50_13930) tcyN 2787208..2787960 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  AB3N50_RS13930 (AB3N50_13935) tcyL 2787957..2788625 (-) 669 WP_001456221.1 cystine ABC transporter permease -
  AB3N50_RS13935 (AB3N50_13940) dcyD 2788640..2789626 (-) 987 WP_001565616.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23889.65 Da        Isoelectric Point: 6.9614

>NTDB_id=920260 AB3N50_RS13890 WP_169772894.1 2784072..2784728(-) (letA) [Escherichia coli strain STS73-1-E]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMNMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=920260 AB3N50_RS13890 WP_169772894.1 2784072..2784728(-) (letA) [Escherichia coli strain STS73-1-E]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGTCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAATATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482