Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCV50_RS12020 Genome accession   NZ_AP025487
Coordinates   2758692..2759672 (-) Length   326 a.a.
NCBI ID   WP_261903151.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2753692..2764672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS12005 recA 2754256..2755293 (-) 1038 WP_261903149.1 recombinase RecA Machinery gene
  OCV50_RS12010 pncC 2755434..2755925 (-) 492 WP_239841225.1 nicotinamide-nucleotide amidase -
  OCV50_RS12015 mutS 2756047..2758608 (+) 2562 WP_261903150.1 DNA mismatch repair protein MutS -
  OCV50_RS12020 rpoS 2758692..2759672 (-) 981 WP_261903151.1 RNA polymerase sigma factor RpoS Regulator
  OCV50_RS12025 - 2759768..2760718 (-) 951 WP_261903152.1 peptidoglycan DD-metalloendopeptidase family protein -
  OCV50_RS12030 - 2760751..2761377 (-) 627 WP_261903153.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCV50_RS12035 surE 2761374..2762120 (-) 747 WP_261903154.1 5'/3'-nucleotidase SurE -
  OCV50_RS12040 truD 2762157..2763206 (-) 1050 WP_261903155.1 tRNA pseudouridine(13) synthase TruD -
  OCV50_RS12045 ispF 2763229..2763708 (-) 480 WP_239841232.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCV50_RS12050 ispD 2763711..2764412 (-) 702 WP_261903156.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37420.59 Da        Isoelectric Point: 4.8445

>NTDB_id=92015 OCV50_RS12020 WP_261903151.1 2758692..2759672(-) (rpoS) [Vibrio fortis strain LMG 21557]
MSIRNAVIKEEFELDQETTELANVEQGEQTVTKKAEVKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVSDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDVNNSDPE
VSTQDSDIKTSLIYWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=92015 OCV50_RS12020 WP_261903151.1 2758692..2759672(-) (rpoS) [Vibrio fortis strain LMG 21557]
ATGAGTATCAGAAATGCAGTTATTAAAGAAGAGTTCGAACTTGATCAAGAGACCACGGAGTTGGCAAATGTTGAGCAAGG
CGAACAAACCGTCACTAAAAAAGCAGAAGTAAAAGAAGAAGTCGAAGTGACTTCGAAGAGCCTAGATGCAACACAGTTGT
ATTTGGGTGAAATTGGCTTCTCACCACTCTTAACCGCAGAAGAAGAAGTGCTTTATGCTCGTCGTGCATTACGCGGAGAC
GAAGCAGCTCGCAAGCGCATGATCGAAAGTAACCTACGTCTTGTGGTAAAAATTTCTCGTCGTTATAGCAATCGCGGCCT
GGCTCTGCTTGATCTTATTGAAGAAGGCAACCTAGGTCTGATTCGTGCGGTCGAGAAGTTCGATCCAGAACGTGGTTTCC
GTTTTTCTACTTACGCAACATGGTGGATTCGTCAAACGATTGAACGTGCGTTAATGAACCAAACGCGTACTATCCGTCTA
CCAATTCATGTAGTGAAAGAACTCAACATCTACCTGCGTACTGCTCGCGAACTATCGCAAAAGCTTGACCATGAGCCAAC
AGCTGAAGAGATCGCGACTAAGCTAGATAAGCCTGTGAGCGATGTAAGCAAAATGCTACGCCTTAATGAACGCGTAAGCT
CGGTCGACACGCCGATTGGTGGTGATGGTGAGAAAGCACTACTGGACATCATCCCAGACGTAAATAACTCTGATCCAGAG
GTTTCAACTCAAGATAGTGATATCAAAACGTCACTGATCTACTGGTTAGATGAACTGAATCCTAAGCAGAAAGAGGTGCT
AGCACGCCGCTTTGGCCTTCTTGGCTATGAGCCATCGACTCTTGAAGAAGTAGGGCGTGAAATTAGCCTAACTCGCGAAC
GTGTGCGTCAGATTCAAGTAGAAGGTCTACGTCGTTTAAGAGAGATCCTTATCAAGCAAGGCTTGAATATGGAAAACCTA
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70, region 4 (Sigma70_r4)

(255-308)

Sigma-70 region 3 (Sigma70_r3)

(167-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.437

100

0.834

Multiple sequence alignment