Detailed information NTG0920144

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: VDS57_RS07770
• Genome accession: NZ_CP141839
• Coordinates: 1453197..1454342 (+)
• Length: 381 a.a.
• NCBI ID: WP_069837832.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain PN1236
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1448197..1459342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VDS57_RS07745 (VDS57_07745)	albF	1448217..1449497 (+)	1281	WP_017696258.1	M16 family metallopeptidase	-
VDS57_RS07750 (VDS57_07750)	albG	1449494..1450195 (+)	702	WP_046160959.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
VDS57_RS07755 (VDS57_07755)	ywhL	1450201..1451577 (-)	1377	WP_324271429.1	YncE family protein	-
VDS57_RS07760 (VDS57_07760)	ywhK	1451616..1452967 (-)	1352	Protein_1520	YncE family protein	-
VDS57_RS07765 (VDS57_07765)	-	1452964..1453194 (-)	231	Protein_1521	hypothetical protein	-
VDS57_RS07770 (VDS57_07770)	rapF	1453197..1454342 (+)	1146	WP_069837832.1	response regulator aspartate phosphatase RapF	Regulator
VDS57_RS07775 (VDS57_07775)	phrF	1454326..1454445 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
VDS57_RS07780 (VDS57_07780)	-	1454543..1454970 (+)	428	Protein_1524	YbaK/EbsC family protein	-
VDS57_RS07785 (VDS57_07785)	-	1455131..1456483 (+)	1353	WP_014478984.1	IS1182 family transposase	-
VDS57_RS07790 (VDS57_07790)	speB	1456615..1457487 (-)	873	WP_003227545.1	agmatinase	-
VDS57_RS07795 (VDS57_07795)	speE	1457548..1458378 (-)	831	WP_003227543.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45624.07 Da
• Isoelectric Point: 5.0624

>NTDB_id=920144 VDS57_RS07770 WP_069837832.1 1453197..1454342(+) (rapF) [Bacillus subtilis strain PN1236]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFTIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=920144 VDS57_RS07770 WP_069837832.1 1453197..1454342(+) (rapF) [Bacillus subtilis strain PN1236]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACAGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCACTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (223-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	98.688	100	0.987
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57