Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV50_RS11780 Genome accession   NZ_AP025487
Coordinates   2712840..2713445 (+) Length   201 a.a.
NCBI ID   WP_239841198.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2707840..2718445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS11760 - 2708155..2709072 (-) 918 WP_239841195.1 ABC transporter ATP-binding protein -
  OCV50_RS11765 - 2709297..2710967 (-) 1671 WP_239841196.1 SulP family inorganic anion transporter -
  OCV50_RS11770 can 2711211..2711879 (+) 669 WP_261903132.1 carbonate dehydratase -
  OCV50_RS11775 hpt 2711972..2712502 (-) 531 WP_032551494.1 hypoxanthine phosphoribosyltransferase -
  OCV50_RS11780 opaR 2712840..2713445 (+) 606 WP_239841198.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV50_RS11785 lpdA 2713678..2715108 (-) 1431 WP_032550144.1 dihydrolipoyl dehydrogenase -
  OCV50_RS11790 aceF 2715349..2717250 (-) 1902 WP_261903133.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23322.67 Da        Isoelectric Point: 6.6886

>NTDB_id=92007 OCV50_RS11780 WP_239841198.1 2712840..2713445(+) (opaR) [Vibrio fortis strain LMG 21557]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKQNLTNITNQMVALVEQDCHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFVKAIERGEVCDQHEPK
HLANLFHGICYSLFIQAKRANSTEELHTLTESYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=92007 OCV50_RS11780 WP_239841198.1 2712840..2713445(+) (opaR) [Vibrio fortis strain LMG 21557]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTTCAATTGATGGAGATCGCTCTTGA
AGTATTCTCTCGCCGTGGCATTGGCCGAGGCGGACATGCGGATATCGCGGATATCGCTCAAGTATCTGTAGCAACCGTAT
TTAACTACTTCCCAACGCGTGAAGATCTGGTCGACGAGGTTCTAAACCATGTTGTTCGTCAGTTCTCAAACTTTCTTTCA
GACAATATCGACCTTGATCTGCATGCGAAACAAAACCTAACTAACATCACCAACCAAATGGTTGCGCTTGTTGAGCAAGA
TTGCCACTGGCTCAATGTTTGGTTCGAATGGAGTGCTTCGACTCGTGATGAAGTATGGCCATTGTTCGTAACAACCAATC
GCACCAATCAAATGCTGGTGCAGAATATGTTCGTGAAAGCGATTGAACGTGGTGAAGTTTGTGATCAACATGAACCGAAA
CACTTGGCGAACCTATTCCATGGTATCTGTTACTCACTGTTTATTCAGGCGAAACGTGCAAATTCAACCGAAGAGCTGCA
CACGCTAACAGAAAGCTACCTAAATATGTTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83.5

99.502

0.831
  hapR Vibrio cholerae C6706

72.864

99.005

0.721
  hapR Vibrio cholerae strain A1552

72.864

99.005

0.721

Multiple sequence alignment