Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   VO178_RS17640 Genome accession   NZ_CP141829
Coordinates   3577004..3577336 (-) Length   110 a.a.
NCBI ID   WP_008181040.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain TZA38     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3572004..3582336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO178_RS17605 (VO178_17605) gcvPA 3572140..3573486 (-) 1347 WP_324728559.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  VO178_RS17610 (VO178_17610) gcvT 3573512..3574615 (-) 1104 WP_096365269.1 glycine cleavage system aminomethyltransferase GcvT -
  VO178_RS17615 (VO178_17615) - 3575119..3575634 (-) 516 WP_025116055.1 shikimate kinase -
  VO178_RS17620 (VO178_17620) - 3575655..3575855 (-) 201 WP_324728560.1 hypothetical protein -
  VO178_RS17625 (VO178_17625) comGF 3575833..3576261 (-) 429 WP_150907158.1 competence type IV pilus minor pilin ComGF -
  VO178_RS17630 (VO178_17630) - 3576254..3576571 (-) 318 WP_036221521.1 hypothetical protein -
  VO178_RS17635 (VO178_17635) comGD 3576564..3577004 (-) 441 WP_036127068.1 competence type IV pilus minor pilin ComGD -
  VO178_RS17640 (VO178_17640) comGC 3577004..3577336 (-) 333 WP_008181040.1 competence type IV pilus major pilin ComGC Machinery gene
  VO178_RS17645 (VO178_17645) comGB 3577338..3578420 (-) 1083 WP_324728561.1 competence type IV pilus assembly protein ComGB -
  VO178_RS17650 (VO178_17650) comGA 3578395..3579414 (-) 1020 WP_249659470.1 competence type IV pilus ATPase ComGA -
  VO178_RS17655 (VO178_17655) - 3579739..3580449 (+) 711 WP_036127077.1 helix-turn-helix transcriptional regulator -
  VO178_RS17660 (VO178_17660) - 3580567..3580809 (+) 243 WP_004231035.1 DUF2626 family protein -
  VO178_RS17665 (VO178_17665) - 3580856..3581500 (-) 645 WP_036221513.1 MBL fold metallo-hydrolase -
  VO178_RS17670 (VO178_17670) - 3581670..3581849 (+) 180 WP_008181026.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12241.32 Da        Isoelectric Point: 5.1145

>NTDB_id=920034 VO178_RS17640 WP_008181040.1 3577004..3577336(-) (comGC) [Lysinibacillus fusiformis strain TZA38]
MKHIKQQNGFTLIEMLIVLLIISILILITIPNVTKHFATIDEKGCAAYINMVQGQVEAYRVDFMAYPTLEDLVKEGYLKE
NETTCPNKEEIVITTKGEVRLANVGAGTNG

Nucleotide


Download         Length: 333 bp        

>NTDB_id=920034 VO178_RS17640 WP_008181040.1 3577004..3577336(-) (comGC) [Lysinibacillus fusiformis strain TZA38]
ATGAAACATATTAAACAACAAAATGGTTTTACTTTAATCGAAATGCTCATTGTTTTGTTAATCATTTCCATTCTAATTTT
AATTACAATTCCAAATGTTACGAAGCACTTCGCTACGATTGATGAGAAGGGCTGTGCTGCCTATATTAATATGGTACAGG
GGCAAGTAGAAGCCTATAGAGTGGATTTTATGGCATATCCAACTTTAGAGGATTTAGTGAAAGAAGGCTATTTGAAAGAA
AATGAAACAACTTGTCCTAATAAAGAAGAAATAGTTATTACGACTAAGGGAGAGGTACGTTTAGCAAATGTCGGTGCAGG
TACGAATGGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

55.208

87.273

0.482
  comGC Staphylococcus aureus MW2

45.263

86.364

0.391
  comGC Staphylococcus aureus N315

45.263

86.364

0.391